MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-1994-o1a

Family name MIR-1994 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-1994-o1b  Lan-Mir-1994-o2a  Lan-Mir-1994-o2b 
Orthologues Agr-Mir-1994-P1  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P1  Efe-Mir-1994  Esc-Mir-1994-P1  Hru-Mir-1994-P1  Lgi-Mir-1994-P1  Lhy-Mir-1994-P1  Llo-Mir-1994  Mgi-Mir-1994-P1  Mom-Mir-1994-P1  Npo-Mir-1994-P1  Obi-Mir-1994-P1  Ovu-Mir-1994-P1  Pve-Mir-1994-P1  Rph-Mir-1994-P1  War-Mir-1994-P1 
Node of Origin (locus) L. anatina
Node of Origin (family) Lophotrochozoa
Genome context
(LinAna_1.0)		 LFEI01001236: 5797-5854 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1994-o1a)		 Mir-1994-o1a LFEI01001236: 5797-5854 [+] Ensembl
Mir-1994-o2a LFEI01001236: 8383-8454 [+] Ensembl
Seed GAGACAG
Precursor
(pre-Mir +30nt flank)		 
CUGACAAAAUUAAAAGAGUUUGUACCGACGAGGGAGUACACACUUGCCUCAUGUUGUGUAAGAGGGUGAGACAGUGUGUCCUCCUUCAGCGUGACAACAGCGCCAUCUGGUAGAAUAA
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Structure
        10           20        30        40        50         
CUGACAAAAUUAAAAGA---|  U  AC  AC       U       U C     GUUGUG 
                    GUU GU  CG  GAGGGAG ACACACU G CUCAU      \
                    CAA CA  GC  CUUCCUC UGUGUGA C GAGUG      U
AAUAAGAUGGUCUACCGCGA^  -  GU  GA       C       - A     GGAGAA 
      110       100         90        80         70        60
Deep sequencing
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CommentIt is unclear how the two paralogues of Mir-1994 in the brachiopod and the phoronid relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Lan-Mir-1994-o1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGAGUACACACUUGCCUCAUG -23
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Mature sequence

Lan-Mir-1994-o1a_3p
mirBase accessionNone
Sequence 
36- UGAGACAGUGUGUCCUCCUUCA -58
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