Mir-1994

MirGeneDB ID

Cte-Mir-1994

Family name

MIR-1994 (all species)

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-1994

Paralogues

Orthologues

Agr-Mir-1994-P1 Agr-Mir-1994-P2 Dgr-Mir-1994 Eba-Mir-1994-P1 Eba-Mir-1994-P2 Efe-Mir-1994 Esc-Mir-1994-P1 Esc-Mir-1994-P2 Hru-Mir-1994-P1 Hru-Mir-1994-P2 Lan-Mir-1994-o1a Lan-Mir-1994-o1b Lan-Mir-1994-o2a Lan-Mir-1994-o2b Lgi-Mir-1994-P1 Lgi-Mir-1994-P2 Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mgi-Mir-1994-P2 Mom-Mir-1994-P1 Mom-Mir-1994-P2 Npo-Mir-1994-P1 Npo-Mir-1994-P2 Obi-Mir-1994-P1 Obi-Mir-1994-P2 Ofu-Mir-1994-P9 Ofu-Mir-1994-P10 Ovu-Mir-1994-P1 Ovu-Mir-1994-P2 Pau-Mir-1994-o3 Pau-Mir-1994-o4 Pve-Mir-1994-P1 Pve-Mir-1994-P2a Pve-Mir-1994-P2b Rph-Mir-1994-P1 Rph-Mir-1994-P2 Snu-Mir-1994-P5 Snu-Mir-1994-P6 Snu-Mir-1994-P7 Snu-Mir-1994-P8 War-Mir-1994-P1 War-Mir-1994-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Lophotrochozoa

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_194: 66138-66207 [+] Ensembl

Seed

GAGACAG

Precursor
(pre-Mir +30nt flank)

AUCCUGGGAUUUCACUGAGCGGUUGUGCAUCGGGUGGAAGCGCUGUCUGCACCGGAUAUCCGGAUUGUAUCCGUCCGUUGAGACAGUGUGUCCUCCCUCUGGACGCCGUUCACUCUCAGCAUAGUCAUCU

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Structure

        10           20        30        40        50        60     
AUCCUGGGAUUUCACUG---|     U  G  UC   U   A         G  C GGAUAUCCGGA 
                    AGCGGU GU CA  GGG GGA GCGCUGUCU CA C           \
                    UUGCCG CA GU  CCC CCU UGUGACAGA GU G           U
UCUACUGAUACGACUCUCAC^     -  G  CU   U   G         -  U CCUGCCUAUGU 
.       120       110        100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Fe	Fe	La	La	Ma	Ma	To

Star sequence

Cte-Mir-1994_5p*

mirBase accession

None

Sequence

0- CGGGUGGAAGCGCUGUCUGCACC -23

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Mature sequence

Cte-Mir-1994_3p

mirBase accession

MIMAT0009702

Sequence

48- UGAGACAGUGUGUCCUCCCUCU -70

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