MirGeneDB 3.0

MirGeneDB ID

Snu-Mir-1994-P7

Family name MIR-1994 (all species)
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-1994-P5  Snu-Mir-1994-P6  Snu-Mir-1994-P8 
Orthologues Cte-Mir-1994  Dgr-Mir-1994  Efe-Mir-1994  Llo-Mir-1994 
Node of Origin (locus) S. nudus
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)
CM049320.1: 15730544-15730600 [-]
Clustered miRNAs
(< 50kb from Mir-1994-P7)
Mir-1994-P8 CM049320.1: 15729545-15729601 [-]
Mir-1994-P7 CM049320.1: 15730544-15730600 [-]
Mir-1994-P6 CM049320.1: 15731518-15731575 [-]
Mir-1994-P5 CM049320.1: 15732440-15732501 [-]
Seed GAGACAG
Precursor
(pre-Mir +30nt flank)
AUAUACCUUUAAGAUAUGGUUCUGUUUUCCGGGGAACAAGCUUGCCUCGUUUUCGAUUUUUUAAUGAGACAGCGUGUCCUCCCGUGGAACGGAACUUGAAAUAUCAACCACCAUGUC
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Structure
        10            20        30         40        50       
AUAUACCUUUAAGAUAU----          UC    -|A   A   U C      UUCGA 
                     GGUUCUGUUU  CGGG G ACA GCU G CUCGUU     \
                     UCAAGGCAAG  GCCC C UGU CGA C GAGUAA     U
CUGUACCACCAACUAUAAAGU          GU    U^C   G   - A      UUUUU 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Snu-Mir-1994-P7_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGGAACAAGCUUGCCUCGUU -21
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Mature sequence

Snu-Mir-1994-P7_3p

mirBase accessionNone
Sequence
34- UGAGACAGCGUGUCCUCCCGUGG -57
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