Mir-1994-o4

MirGeneDB ID

Pau-Mir-1994-o4

Family name

MIR-1994 (all species)

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Pau-Mir-1994-o3

Orthologues

Cte-Mir-1994 Dgr-Mir-1994 Efe-Mir-1994 Llo-Mir-1994

Node of Origin (locus)

P. australis

Node of Origin (family)

Lophotrochozoa

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000271.1: 213955-214012 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-1994-o4)

Mir-1994-o3 NMRA01000271.1: 209561-209618 [+] Ensembl
Mir-1994-o4 NMRA01000271.1: 213955-214012 [+] Ensembl

Seed

GAGACAG

Precursor
(pre-Mir +30nt flank)

AAGAAAUCAGUGCUGAACUAUUUCGCGCCAAGGUUGGACAUUGUGUCUACACUGUAAUUGAGCUAGUGAGACAGUGUGUCCUCCCUUGAAGCAUUUCUGUAUCCGCCCUUCAGGCACU

Get precursor sequence

Structure

        10        20          30        40        50         
AAGAAAUCAGUGCUGAACUAUUUC--| GC     UU      UG     A    GUAAU 
                          GC  CAAGG  GGACAU  UGUCU CACU     \
                          CG  GUUCC  CCUGUG  ACAGA GUGA     U
UCACGGACUUCCCGCCUAUGUCUUUA^ AA     CU      UG     -    UCGAG 
      110       100        90        80        70         60

Deep sequencing

Comment

It is unclear how the two paralogues of Mir-1994 in the phoronid and the brachiopod relate to either one another or the two paralogues in molluscs and are hence considered orphans pending further data.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pau-Mir-1994-o4_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUGGACAUUGUGUCUACACU -23

Get sequence

Mature sequence

Pau-Mir-1994-o4_3p (predicted)

mirBase accession

None

Sequence

36- UGAGACAGUGUGUCCUCCCUUG -58

Get sequence