MirGeneDB

94 microRNA genes with node of origin C. gigas
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Cgi-Mir-2-o28 None MIR-2 AUCACAG None None scaffold1503 13873 13931 - C. gigas Protostomia No 1 1
Cgi-Mir-2-o29 None MIR-2 AUCACAG None None scaffold1503 15162 15221 - C. gigas Protostomia No 1
Cgi-Mir-2-o30 None MIR-2 CACAGCC None None scaffold602 445001 445057 + C. gigas Protostomia No 1
Cgi-Mir-2-o31 None MIR-2 AUCACAG None None scaffold602 445140 445196 + C. gigas Protostomia No 1
Cgi-Mir-2-o32 None MIR-2 AUCACAG None None scaffold602 445414 445474 + C. gigas Protostomia No 1
Cgi-Mir-2-o33 None MIR-2 AUCACAG None None scaffold602 445843 445901 + C. gigas Protostomia No
Cgi-Mir-2-o34 None MIR-2 AUCACAG None None scaffold602 446019 446076 + C. gigas Protostomia No 1
Cgi-Mir-2-o35 None MIR-2 AUCACAG None None scaffold602 446534 446592 + C. gigas Protostomia No 1 1
Cgi-Mir-9-P12 None MIR-9 CUUUGGU None None scaffold42448 83582 83643 - C. gigas Bilateria No 1
Cgi-Mir-9-P13 None MIR-9 CUUUGGU None None scaffold42448 84463 84524 - C. gigas Bilateria No 1
Cgi-Mir-9-P14 None MIR-9 CUUUGGU None None scaffold42448 85409 85470 - C. gigas Bilateria No 1
Cgi-Mir-67-P4 None MIR-67 CACAACC None None scaffold146 102638 102698 + C. gigas Protostomia No 1
Cgi-Mir-67-P5 None MIR-67 CACAACC None None scaffold226 224596 224654 - C. gigas Protostomia No 1 1
Cgi-Mir-67-P6 None MIR-67 ACAACCU None None scaffold146 102295 102351 + C. gigas Protostomia No 1 1
Cgi-Mir-87-o7 None MIR-87 UGAGCAA None None scaffold1600 144750 144808 + C. gigas Protostomia No 1
Cgi-Mir-87-o8 None MIR-87 UGAGCAA None None scaffold1600 146061 146122 + C. gigas Protostomia No 1
Cgi-Mir-92-o31 None MIR-92 AUUGCAC None None C33654 9471 9530 + C. gigas Bilateria No 1 1
Cgi-Mir-92-o32 None MIR-92 AUUGCAC None None scaffold459 310883 310941 - C. gigas Bilateria No 1 1
Cgi-Mir-92-o33 None MIR-92 AUUGCAC None None scaffold459 311201 311262 - C. gigas Bilateria No 1
Cgi-Mir-92-o34 None MIR-92 AUUGCAC None None scaffold459 320194 320253 - C. gigas Bilateria No 1 1
Cgi-Mir-96-P2h None MIR-96 UUGGCAC None None scaffold626 26567 26631 + C. gigas Bilateria No 1
Cgi-Mir-96-P2i None MIR-96 UUGGCAC None None scaffold42648 4758 4816 + C. gigas Bilateria No 1
Cgi-Mir-124-P12 None MIR-124 AAGGCAC None None scaffold427 142710 142766 + C. gigas Bilateria No 1
Cgi-Mir-124-P13 None MIR-124 AAGGCAC None None scaffold427 141060 141116 + C. gigas Bilateria No 1
Cgi-Mir-184-P7 None MIR-184 GGACGGA None None scaffold1832 85298 85356 - C. gigas Bilateria No 1
Cgi-Mir-184-P8a None MIR-184 GGACGGA None None scaffold43150 62920 62976 - C. gigas Bilateria No
Cgi-Mir-184-P8b None MIR-184 GGACGGA None None scaffold121 721341 721398 - C. gigas Bilateria No
Cgi-Mir-184-P8c None MIR-184 GGACGGA None None scaffold121 721728 721785 - C. gigas Bilateria No
Cgi-Mir-184-P8d None MIR-184 GGACGGA None None scaffold43150 66305 66362 - C. gigas Bilateria No 1
Cgi-Mir-184-P9 None MIR-184 CUUGUCA None None scaffold121 720703 720760 - C. gigas Bilateria No 1
Cgi-Mir-184-P10 None MIR-184 GGACGGA None None scaffold43150 66053 66110 - C. gigas Bilateria No 1
Cgi-Mir-184-P11 None MIR-184 GGACGGA None None scaffold121 721087 721144 - C. gigas Bilateria No 1
Cgi-Mir-184-P12 None MIR-184 UUGUCAC None None scaffold121 718786 718841 - C. gigas Bilateria No
Cgi-Mir-184-P13a None MIR-184 CUUGUCA None None scaffold43150 67584 67641 - C. gigas Bilateria No 1
Cgi-Mir-184-P13b None MIR-184 GGACGGA None None scaffold43150 66456 66512 - C. gigas Bilateria No 1
Cgi-Mir-184-P14 None MIR-184 GGACGGA None None scaffold43150 66584 66641 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a1 None MIR-184 GGACGGA None None scaffold121 718149 718206 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a2 None MIR-184 GGACGGA None None scaffold121 719424 719481 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a3 None MIR-184 GGACGGA None None scaffold121 720319 720376 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a4 None MIR-184 GGACGGA None None scaffold121 721600 721657 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a5 None MIR-184 GGACGGA None None scaffold121 721856 721913 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a6 None MIR-184 GGACGGA None None scaffold121 722115 722172 - C. gigas Bilateria No
Cgi-Mir-184-P15a7 None MIR-184 GGACGGA None None scaffold121 722371 722428 - C. gigas Bilateria No 1
Cgi-Mir-184-P15b None MIR-184 GGACGGA None None scaffold121 721987 722044 - C. gigas Bilateria No 1
Cgi-Mir-184-P15c None MIR-184 GGACGGA None None scaffold121 718530 718587 - C. gigas Bilateria No 1
Cgi-Mir-184-P15d None MIR-184 GGACGGA None None scaffold121 718658 718715 - C. gigas Bilateria No
Cgi-Mir-184-P15e1 None MIR-184 GGACGGA None None scaffold121 718275 718332 - C. gigas Bilateria No 1
Cgi-Mir-184-P15e2 None MIR-184 GGACGGA None None scaffold121 718401 718458 - C. gigas Bilateria No 1
Cgi-Mir-184-P15e3 None MIR-184 GGACGGA None None scaffold121 720447 720504 - C. gigas Bilateria No 1
Cgi-Mir-184-P15f None MIR-184 GGACGGA None None scaffold121 719552 719609 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g1 None MIR-184 GGACGGA None None scaffold121 719041 719098 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g2 None MIR-184 GGACGGA None None scaffold121 719169 719226 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g3 None MIR-184 GGACGGA None None scaffold121 719297 719354 - C. gigas Bilateria No 1
Cgi-Mir-184-P15h None MIR-184 GGACGGA None None scaffold121 720192 720249 - C. gigas Bilateria No 1
Cgi-Mir-184-P15i None MIR-184 GGACGGA None None scaffold121 721214 721271 - C. gigas Bilateria No 1
Cgi-Mir-184-P15j None MIR-184 GGACGGA None None scaffold121 720064 720121 - C. gigas Bilateria No 1
Cgi-Mir-184-P15k None MIR-184 GGACGGA None None scaffold121 721469 721526 - C. gigas Bilateria No 1
Cgi-Mir-184-P15l1 None MIR-184 GGACGGA None None scaffold121 719680 719737 - C. gigas Bilateria No 1
Cgi-Mir-184-P15l2 None MIR-184 GGACGGA None None scaffold121 720575 720632 - C. gigas Bilateria No 1
Cgi-Mir-184-P15m None MIR-184 GGACGGA None None scaffold121 718913 718970 - C. gigas Bilateria No
Cgi-Mir-184-P15n None MIR-184 GGACGGA None None scaffold43150 63749 63806 - C. gigas Bilateria No
Cgi-Mir-184-P15o None MIR-184 GGACGGA None None scaffold43150 64048 64105 - C. gigas Bilateria No 1
Cgi-Mir-184-P15p None MIR-184 GGACGGA None None scaffold43150 65310 65367 - C. gigas Bilateria No 1
Cgi-Mir-184-P15q None MIR-184 GGACGGA None None scaffold43150 66926 66983 - C. gigas Bilateria No 1
Cgi-Mir-184-P15r None MIR-184 GGACGGA None None scaffold43150 67056 67113 - C. gigas Bilateria No 1
Cgi-Mir-184-P15s None MIR-184 GGACGGA None None scaffold43150 63192 63248 - C. gigas Bilateria No 1
Cgi-Mir-184-P15t None MIR-184 GGACGGA None None scaffold43150 63471 63527 - C. gigas Bilateria No 1
Cgi-Mir-184-P15u None MIR-184 GGACGGA None None scaffold43150 64385 64441 - C. gigas Bilateria No 1
Cgi-Mir-317-P1 None MIR-317 GAACACA None None scaffold622 468076 468134 + C. gigas Protostomia No 1
Cgi-Mir-317-P2 None MIR-317 GAACACA None None scaffold622 468583 468640 + C. gigas Protostomia No 1
Cgi-Mir-375-P3 None MIR-375 UUGUUCA None None scaffold527 290181 290238 + C. gigas Bilateria No 1
Cgi-Mir-375-P4 None MIR-375 UUGUUCA None None scaffold527 289953 290015 + C. gigas Bilateria No 1 1
Cgi-Novel-1 None CGI-NOVEL-1 GGCGAGC None None scaffold960 301290 301359 + C. gigas C. gigas Yes
Cgi-Novel-2 None CGI-NOVEL-2 UUGUAGA None None scaffold258 167543 167599 + C. gigas C. gigas No 1
Cgi-Novel-3 None CGI-NOVEL-3 GAGCUCA None None scaffold1094 247350 247410 + C. gigas C. gigas Yes 1
Cgi-Novel-4 None CGI-NOVEL-4 GACUUCC None None C31910 2181 2242 - C. gigas C. gigas No
Cgi-Novel-5 None CGI-NOVEL-5 GUGCUAG None None scaffold1350 173044 173100 - C. gigas C. gigas No 1
Cgi-Novel-6 None CGI-NOVEL-6 AGUGCAG None None scaffold1423 803499 803557 + C. gigas C. gigas No 1 1
Cgi-Novel-7 None CGI-NOVEL-7 GACCACG None None scaffold1497 36477 36535 + C. gigas C. gigas No
Cgi-Novel-8 None CGI-NOVEL-8 GUGCAAA None None scaffold1503 8643 8701 - C. gigas C. gigas No
Cgi-Novel-9 None CGI-NOVEL-9 UUGCCGG None None scaffold1600 297511 297569 - C. gigas C. gigas No 1
Cgi-Novel-10 None CGI-NOVEL-10 CAUACAA None None scaffold1742 63371 63430 + C. gigas C. gigas No
Cgi-Novel-11 None CGI-NOVEL-11 UGGUAAU None None scaffold1806 144396 144454 - C. gigas C. gigas No 1 1
Cgi-Novel-12 None CGI-NOVEL-12 UUUCCAU None None scaffold1873 110434 110493 - C. gigas C. gigas No
Cgi-Novel-13 None CGI-NOVEL-13 UCAUAAA None None scaffold347 454617 454675 + C. gigas C. gigas No
Cgi-Novel-14 None CGI-NOVEL-14 GCACCAA None None scaffold370 643284 643343 + C. gigas C. gigas No 1
Cgi-Novel-15 None CGI-NOVEL-15 CCAUAUU None None scaffold41304 14671 14729 + C. gigas C. gigas No 1 1
Cgi-Novel-16 None CGI-NOVEL-16 UUGGCAC None None scaffold42648 4758 4816 + C. gigas C. gigas No 1
Cgi-Novel-17 None CGI-NOVEL-17 AAGCACC None None scaffold43038 99752 99842 + C. gigas C. gigas No 1
Cgi-Novel-18 None CGI-NOVEL-18 UUGUACU None None scaffold962 82652 82754 - C. gigas C. gigas No
Cgi-Novel-19 None CGI-NOVEL-19 GCUAUAA None None scaffold631 283594 283651 - C. gigas C. gigas No
Cgi-Novel-20 None CGI-NOVEL-20 GUGGUGC None None scaffold43364 108910 108968 + C. gigas C. gigas No 1 1
Cgi-Novel-21 None CGI-NOVEL-21 AGCAGAU None None scaffold63 434587 434644 + C. gigas C. gigas No
Cgi-Novel-22 None CGI-NOVEL-22 GGUUAAG None None scaffold705 16090 16154 + C. gigas C. gigas No

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