Mir-92-o124

MirGeneDB ID

Pau-Mir-92-o124

Family name

MIR-92 (all species)

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Pau-Mir-92-o120 Pau-Mir-92-o121 Pau-Mir-92-o122 Pau-Mir-92-o123 Pau-Mir-92-o125

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

P. australis

Node of Origin (family)

Bilateria

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000212.1: 607153-607211 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o124)

Mir-92-o123 NMRA01000212.1: 607025-607083 [+] Ensembl
Mir-92-o124 NMRA01000212.1: 607153-607211 [+] Ensembl
Mir-92-o125 NMRA01000212.1: 607618-607674 [+] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UACUAAAUGAUCAAUAUGUUUGCUGAGAACAGGUUCGACAUGAGAGCAAUAGUUGAUAUUAUAAUACCAUUGCACUCGUCUCGGUCUGCUCUGAGCAAGCGUUUUCAGCGGUCACAGCU

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Structure

        10          20        30        40        50         
UACUAAAUGAUCAAUAU--|      G   A     U   C     A     A  UGAUA 
                   GUUUGCU AGA CAGGU CGA AUGAG GCAAU GU     U
                   CGAACGA UCU GUCUG GCU UGCUC CGUUA CA     U
UCGACACUGGCGACUUUUG^      G   C     -   C     A     C  UAAUA 
       110       100        90         80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pau-Mir-92-o124_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUCGACAUGAGAGCAAUAGU -23

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Mature sequence

Pau-Mir-92-o124_3p

mirBase accession

None

Sequence

37- CAUUGCACUCGUCUCGGUCUGC -59

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