MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-92-o123

Family name MIR-92 (all species)
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-92-o120  Pau-Mir-92-o121  Pau-Mir-92-o122  Pau-Mir-92-o124  Pau-Mir-92-o125 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. australis
Node of Origin (family) Bilateria
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000212.1: 607025-607083 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o123)		 Mir-92-o123 NMRA01000212.1: 607025-607083 [+] Ensembl
Mir-92-o124 NMRA01000212.1: 607153-607211 [+] Ensembl
Mir-92-o125 NMRA01000212.1: 607618-607674 [+] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GCUGCCAAGCAAGUAAAAGCUUCUCUGCUGAGGUUGUGAUGGGAGCAAUGUUUUACGAUUACUGAGAUAUUGCACUCGUCCCGGCCUGCGUAGGAUAGCUCUCGACAUAGCAAGUACAU
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Structure
        10          20        30        40        50         
GCUGCCAAGCAAGUAAA--|   UC     UG      U      A        UUACGA 
                   AGCU  UCUGC  AGGUUG GAUGGG GCAAUGUU      \
                   UCGA  GGAUG  UCCGGC CUGCUC CGUUAUAG      U
UACAUGAACGAUACAGCUC^   UA     CG      C      A        AGUCAU 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Pau-Mir-92-o123_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUGUGAUGGGAGCAAUGUU -22
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Mature sequence

Pau-Mir-92-o123_3p
mirBase accessionNone
Sequence 
37- UAUUGCACUCGUCCCGGCCUGC -59
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