| MirGeneDB ID | Lgi-Novel-1 |
|---|
| Family name |
LGI-NOVEL-1 (all species) |
|---|
| Species |
Owl limpet (Lottia gigantea) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
L. gigantea
|
|---|
| Node of Origin (family) |
L. gigantea
|
|---|
Genome context
(Lotgi1) |
LOTGIsca_115: 803487-803546 [-]
Ensembl
|
|---|
| Seed |
CAAACAU |
|---|
Precursor
(pre-Mir +30nt flank) |
GUGAAGACACAGGAACCAAUAUUGAGGGAGCUUGCCAAUGUCUUGUUUUCUGAUUAAAAUUUAACUCACAAACAUCACAUUUGUAAGGUUUCCACUUUAUUACCUACAACAUCAUUUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGAAGACACAGGAACCAAUAUUGA-- -| C CU UC UUAAA
GGGAG CUUGC AAUGU UGUUU UGA A
CCUUU GAAUG UUACA ACAAA ACU U
AGAUUUACUACAACAUCCAUUAUUUCA G^ U CU C- CAAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lgi-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUGCCAAUGUCUUGUUUUCUGA -23
Get sequence
|
|---|
| Mature sequence |
Lgi-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- ACAAACAUCACAUUUGUAAGGUU -60
Get sequence
|
|---|
