| MirGeneDB ID | Lgi-Mir-1988 |
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| Family name |
MIR-1988 (all species) |
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| Seed |
GUGGUUU |
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| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
lgi-mir-1988
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. gigantea
|
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| Node of Origin (family) |
L. gigantea
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Genome context
(Lotgi1) |
LOTGIsca_162: 318652-318708 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGUAUCAGCAAUUCCAAGCUGUCUUGUUCAGUGGUUUUCCGUUGCACAUGCGUACAUAGCAUGCAUGCGCAACGGGAGAUCAACGGAUAAGAUAGUUAUUUCAUCAAAAUCACCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGUAUCAGCAAUUCCA--| AG A GUACA
AGCUGUCUUGUUC UGGUUUUCCGUUGC CAUGC \
UUGAUAGAAUAGG ACUAGAGGGCAACG GUACG U
ACCCACUAAAACUACUUUA^ CA C UACGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Lgi-Mir-1988_5p |
| mirBase accession | MIMAT0009729 |
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| Sequence |
0- AGUGGUUUUCCGUUGCACAUGC -22
Get sequence
|
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| Star sequence |
Lgi-Mir-1988_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AUGCGCAACGGGAGAUCAACGG -57
Get sequence
|
|---|
