| MirGeneDB ID | Hru-Mir-1988 |
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| Family name |
MIR-1988 (all species) |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Lgi-Mir-1988
|
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| Node of Origin (locus) |
Gastropoda
|
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| Node of Origin (family) |
Gastropoda
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000010.1: 9665708-9665765 [-]
UCSC
Ensembl
|
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| Seed |
GUGGUUU |
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Precursor
(pre-Mir +30nt flank) |
UUCAGUACCGAAAGUGACGGUGCCAGGUCCAGUGGUUUUCCGUUGCACAUGCUUAGUGCUGUACGCAUGCGCAACUGAAAAUCAACGGCACUGGCACUGAUGUCGUCCCGCCUUGGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCAGUACCGAAAGUGA--| GU AG C A UUAGU
CGGUGCCAG CC UGGUUUUC GUUGC CAUGC G
GUCACGGUC GG ACUAAAAG CAACG GUACG C
UAGGUUCCGCCCUGCUGUA^ AC CA U C CAUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Hru-Mir-1988_5p |
| mirBase accession | None |
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| Sequence |
0- AGUGGUUUUCCGUUGCACAUGC -22
Get sequence
|
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| Co-mature sequence |
Hru-Mir-1988_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AUGCGCAACUGAAAAUCAACGG -58
Get sequence
|
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