MirGeneDB ID | Lgi-Mir-67 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Owl limpet (Lottia gigantea) |
MiRBase ID |
lgi-mir-67
|
Paralogues |
|
Orthologues |
Aae-Mir-67-v1
Aae-Mir-67-v2
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cgi-Mir-67-P4
Cgi-Mir-67-P5
Cgi-Mir-67-P6
Csc-Mir-67
Cte-Mir-67
Dan-Mir-67-v1
Dan-Mir-67-v2
Dma-Mir-67
Dme-Mir-67-v1
Dme-Mir-67-v2
Dme-Mir-67-v3
Dmo-Mir-67-v1
Dmo-Mir-67-v2
Dpu-Mir-67
Dsi-Mir-67-v1
Dsi-Mir-67-v2
Dsi-Mir-67-v3
Dya-Mir-67-v1
Dya-Mir-67-v2
Dya-Mir-67-v3
Efe-Mir-67-P1
Efe-Mir-67-P2
Efe-Mir-67-P3
Hme-Mir-67-v1
Hme-Mir-67-v2
Isc-Mir-67
Lan-Mir-67
Lpo-Mir-67-P7
Lpo-Mir-67-P8
Lpo-Mir-67-P9
Lpo-Mir-67-P10
Lpo-Mir-67-P11
Npo-Mir-67
Obi-Mir-67
Ovu-Mir-67
Sme-Mir-67
Tca-Mir-67-v1
Tca-Mir-67-v2
Tca-Mir-67-v3
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Lotgi1) |
LOTGIsca_139: 406874-406933 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAAGAGUUUUAUCACGUGGUCUGUGUGUCCCUGUUCAUCGUGGUUGUGAUGUCCUCUUUGAAUCAUCACAACCUGCAUGAAUGAGGACAGGCUCGCCAUCCUCUCUACACAUCCUUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAAGAGUUUUAUCAC--| CU G CU C - UCCUC
GUGGU GU UGUCC GUUCAU GU GGUUGUGAUG U
UACCG CG ACAGG UAAGUA CG CCAACACUAC U
GGUUCCUACACAUCUCUCC^ CU G AG - U UAAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lgi-Mir-67_5p* |
mirBase accession | None |
Sequence |
0- CCCUGUUCAUCGUGGUUGUGAUG -23
Get sequence
|
Mature sequence |
Lgi-Mir-67_3p |
mirBase accession | MIMAT0009570 |
Sequence |
37- UCACAACCUGCAUGAAUGAGGAC -60
Get sequence
|