MirGeneDB ID | Efe-Mir-67-P2 |
Family name |
MIR-67 (all species) |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-67-P1
Efe-Mir-67-P3
|
Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cte-Mir-67
Dgr-Mir-67
Dma-Mir-67
Dpu-Mir-67
Egr-Mir-67
Gsa-Mir-67
Hru-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ofu-Mir-67
Ovu-Mir-67
Pau-Mir-67
Pca-Mir-67
Pdu-Mir-67
Sma-Mir-67
Sme-Mir-67
Snu-Mir-67
Tur-Mir-67
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.29421: 209-271 [-]
|
Seed |
CCUUAUU |
Precursor (pre-Mir +30nt flank) |
GCAGCUGGAGGAUGUAUUGCAAGGAGUCUGACCUUAUUCCGUGGUGUUGGGAUGGUUAAACUGGCCUCAUCACAACCUACUUGAAUAAGGUAGGACGCCCAGCACAGAACAGCCAAUCAGCGU
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|
Structure | 10 20 30 40 50 60
GCAGCUGGAGGAUGUAU-- AA A G C-| U G GGUUAAA
UGC GG GUCU ACCUUAUUC GUGG GUUG GAU \
ACG CC CAGG UGGAAUAAG CAUC CAAC CUA C
UGCGACUAACCGACAAGAC AC G A UU^ - A CUCCGGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-67-P2_5p |
mirBase accession | None |
Sequence |
0- ACCUUAUUCCGUGGUGUUGGGAU -23
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|
Co-mature sequence |
Efe-Mir-67-P2_3p |
mirBase accession | None |
Sequence |
40- CACAACCUACUUGAAUAAGGUAG -63
Get sequence
|