MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-67

Family name MIR-67 (all species)
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues Aae-Mir-67-v1  Aga-Mir-67-v1  Agr-Mir-67-v1  Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Csc-Mir-67-P12  Csc-Mir-67-P13  Cte-Mir-67  Dan-Mir-67-v1  Dgr-Mir-67  Dlo-Mir-67-P14-v1  Dlo-Mir-67-P15-v1  Dma-Mir-67  Dme-Mir-67-v1  Dmo-Mir-67-v1  Dpu-Mir-67  Dsi-Mir-67-v1  Dya-Mir-67-v1  Eba-Mir-67-v1  Efe-Mir-67-P1  Efe-Mir-67-P2  Efe-Mir-67-P3  Egr-Mir-67  Gpa-Mir-67-P12-v1  Gpa-Mir-67-P13-v1  Gsa-Mir-67  Hme-Mir-67-v1  Hru-Mir-67  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Lpo-Mir-67-P7  Lpo-Mir-67-P8  Lpo-Mir-67-P9  Lpo-Mir-67-P10  Lpo-Mir-67-P11  Mgi-Mir-67-P4  Mgi-Mir-67-P5  Mgi-Mir-67-P6  Mom-Mir-67-v1  Npo-Mir-67  Obi-Mir-67  Ofu-Mir-67  Ovu-Mir-67  Pau-Mir-67  Pca-Mir-67  Pcr-Mir-67-v1  Pdu-Mir-67  Pve-Mir-67-v1  Rph-Mir-67-v1  Sme-Mir-67  Snu-Mir-67  Tca-Mir-67-v1  Tur-Mir-67  War-Mir-67-v1 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601627.3: 1541977-1542084 [+] UCSC Ensembl
Seed CACAACC
Precursor
(pre-Mir +30nt flank)		 
GAAUAUUCUAUUUGACUAGUCCAAGAAUCUCCUCAUAAAGAAGGUUGUUCGAUGUAUUCAAUAAUGUUAUUCAUUAAAAUAUUAUUAUAACAAUAAUAGUUUUUAAACGAACACAUCACAACCUACUUGAUUGAGGGGCGCUUCGACUUUACACAUCAAUGAAAAGUA
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Structure
        10           20        30         40        50        60        70        80    
GAAUAUUCUAUUUGACU---|   C   AAU       UA-   A       UC    UAUUCAAUAAUGUUAUUCAUUAAAAUAUU 
                    AGUC AAG   CUCCUCA   AAG AGGUUGU  GAUG                             \
                    UCAG UUC   GGGGAGU   UUC UCCAACA  CUAC                             A
AUGAAAAGUAACUACACAUU^   C   GC-       UAG   A       --    ACAAGCAAAUUUUUGAUAAUAACAAUAUU 
      160       150       140        130       120         110       100        90
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Star sequence

Sma-Mir-67_5p*
mirBase accessionNone
Sequence 
0- CCUCAUAAAGAAGGUUGUUCGAUG -24
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Mature sequence

Sma-Mir-67_3p
mirBase accessionNone
Sequence 
85- UCACAACCUACUUGAUUGAGGGG -108
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