MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-67-P9

Family name MIR-67 (all species)
Seed CACAACC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-67-P7  Lpo-Mir-67-P8  Lpo-Mir-67-P10  Lpo-Mir-67-P11 
Orthologues Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Csc-Mir-67  Cte-Mir-67  Dma-Mir-67  Dpu-Mir-67  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Npo-Mir-67  Obi-Mir-67  Ovu-Mir-67  Sme-Mir-67 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013670247.1: 82302-82365 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCAUCAAGUCUCAACCCAACUUGCCUCCCUCACUCAACCUGGCUGUGGUGUGGGGUUUACCCACUCCAUCACAACCUCCUUGAGUGAGUGAUGCGAGUUGGGAAAUUCGUCAGUCUCGUCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUUUCAUCAAGUCUCAA--|         C  C         CCU  C       UGGGGUU 
                   CCCAACUUGC UC CUCACUCAA   GG UGUGGUG       U
                   GGGUUGAGCG AG GAGUGAGUU   CC ACACUAC       A
ACUGCUCUGACUGCUUAAA^         U  U         CCU  A       CUCACCC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-67-P9_5p*

mirBase accessionNone
Sequence
0- CCUCACUCAACCUGGCUGUGGUG -23
Get sequence
Mature sequence

Lpo-Mir-67-P9_3p

mirBase accessionNone
Sequence
41- UCACAACCUCCUUGAGUGAGUGA -64
Get sequence