MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-67

Family name MIR-67 (all species)
Seed CACAACC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-67
Paralogues
Orthologues Aae-Mir-67-v1  Aae-Mir-67-v2  Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Cgi-Mir-67-P4  Cgi-Mir-67-P5  Cgi-Mir-67-P6  Csc-Mir-67  Cte-Mir-67  Dan-Mir-67-v1  Dan-Mir-67-v2  Dma-Mir-67  Dme-Mir-67-v1  Dme-Mir-67-v2  Dme-Mir-67-v3  Dmo-Mir-67-v1  Dmo-Mir-67-v2  Dpu-Mir-67  Dsi-Mir-67-v1  Dsi-Mir-67-v2  Dsi-Mir-67-v3  Dya-Mir-67-v1  Dya-Mir-67-v2  Dya-Mir-67-v3  Efe-Mir-67-P1  Efe-Mir-67-P2  Efe-Mir-67-P3  Hme-Mir-67-v1  Hme-Mir-67-v2  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Lpo-Mir-67-P7  Lpo-Mir-67-P8  Lpo-Mir-67-P9  Lpo-Mir-67-P10  Lpo-Mir-67-P11  Npo-Mir-67  Obi-Mir-67  Ovu-Mir-67  Tca-Mir-67-v1  Tca-Mir-67-v2  Tca-Mir-67-v3 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000109_dd_Smes_g4_109: 927817-927873 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGAAAUAUGAUAUUUCGUGUAAUAUUAGCCUCAUUCUAUGGGUUGUUAUGAUGCAAUAUCAUCACAACCUCCAUGAACGAGGGUAAUCGACAUGAUCUACGGCUUGAGUUUUUAU
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Structure
        10            20        30        40         50       
GGUGAAAUAUGAUAUUU----|    AAU    G    A   UAU-       U   AUGC 
                     CGUGU   AUUA CCUC UUC    GGGUUGU AUG    \
                     GUACA   UAAU GGAG AAG    UCCAACA UAC    A
UAUUUUUGAGUUCGGCAUCUA^    GC-    G    C   UACC       C   UAUA 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-67_5p*

mirBase accessionMIMAT0012122
Sequence
0- CCUCAUUCUAUGGGUUGUUAUG -22
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Mature sequence

Sme-Mir-67_3p

mirBase accessionMIMAT0004014
Sequence
33- UCACAACCUCCAUGAACGAGGGUA -57
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