MirGeneDB ID | Sme-Mir-67 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-67
|
Paralogues |
|
Orthologues |
Aae-Mir-67-v1
Aae-Mir-67-v2
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cgi-Mir-67-P4
Cgi-Mir-67-P5
Cgi-Mir-67-P6
Csc-Mir-67
Cte-Mir-67
Dan-Mir-67-v1
Dan-Mir-67-v2
Dma-Mir-67
Dme-Mir-67-v1
Dme-Mir-67-v2
Dme-Mir-67-v3
Dmo-Mir-67-v1
Dmo-Mir-67-v2
Dpu-Mir-67
Dsi-Mir-67-v1
Dsi-Mir-67-v2
Dsi-Mir-67-v3
Dya-Mir-67-v1
Dya-Mir-67-v2
Dya-Mir-67-v3
Efe-Mir-67-P1
Efe-Mir-67-P2
Efe-Mir-67-P3
Hme-Mir-67-v1
Hme-Mir-67-v2
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Lpo-Mir-67-P7
Lpo-Mir-67-P8
Lpo-Mir-67-P9
Lpo-Mir-67-P10
Lpo-Mir-67-P11
Npo-Mir-67
Obi-Mir-67
Ovu-Mir-67
Tca-Mir-67-v1
Tca-Mir-67-v2
Tca-Mir-67-v3
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000109_dd_Smes_g4_109: 927817-927873 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGAAAUAUGAUAUUUCGUGUAAUAUUAGCCUCAUUCUAUGGGUUGUUAUGAUGCAAUAUCAUCACAACCUCCAUGAACGAGGGUAAUCGACAUGAUCUACGGCUUGAGUUUUUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUGAAAUAUGAUAUUU----| AAU G A UAU- U AUGC
CGUGU AUUA CCUC UUC GGGUUGU AUG \
GUACA UAAU GGAG AAG UCCAACA UAC A
UAUUUUUGAGUUCGGCAUCUA^ GC- G C UACC C UAUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-67_5p* |
mirBase accession | MIMAT0012122 |
Sequence |
0- CCUCAUUCUAUGGGUUGUUAUG -22
Get sequence
|
Mature sequence |
Sme-Mir-67_3p |
mirBase accession | MIMAT0004014 |
Sequence |
33- UCACAACCUCCAUGAACGAGGGUA -57
Get sequence
|