Mir-67

MirGeneDB ID

Sme-Mir-67

Family name

MIR-67 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-67

Paralogues

Orthologues

Aae-Mir-67-v1 Aga-Mir-67-v1 Agr-Mir-67-v1 Asu-Mir-67 Bge-Mir-67 Cbr-Mir-67 Cel-Mir-67 Csc-Mir-67-P12 Csc-Mir-67-P13 Cte-Mir-67 Dan-Mir-67-v1 Dgr-Mir-67 Dlo-Mir-67-P14-v1 Dlo-Mir-67-P15-v1 Dma-Mir-67 Dme-Mir-67-v1 Dmo-Mir-67-v1 Dpu-Mir-67 Dsi-Mir-67-v1 Dya-Mir-67-v1 Eba-Mir-67-v1 Efe-Mir-67-P1 Efe-Mir-67-P2 Efe-Mir-67-P3 Egr-Mir-67 Gpa-Mir-67-P12-v1 Gpa-Mir-67-P13-v1 Gsa-Mir-67 Hme-Mir-67-v1 Hru-Mir-67 Isc-Mir-67 Lan-Mir-67 Lgi-Mir-67 Lpo-Mir-67-P7 Lpo-Mir-67-P8 Lpo-Mir-67-P9 Lpo-Mir-67-P10 Lpo-Mir-67-P11 Mgi-Mir-67-P4 Mgi-Mir-67-P5 Mgi-Mir-67-P6 Mom-Mir-67-v1 Npo-Mir-67 Obi-Mir-67 Ofu-Mir-67 Ovu-Mir-67 Pau-Mir-67 Pca-Mir-67 Pcr-Mir-67-v1 Pdu-Mir-67 Pve-Mir-67-v1 Rph-Mir-67-v1 Sma-Mir-67 Snu-Mir-67 Tca-Mir-67-v1 Tur-Mir-67 War-Mir-67-v1

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000109_dd_Smes_g4_109: 927817-927873 [+] UCSC Ensembl

Seed

CACAACC

Precursor
(pre-Mir +30nt flank)

GGUGAAAUAUGAUAUUUCGUGUAAUAUUAGCCUCAUUCUAUGGGUUGUUAUGAUGCAAUAUCAUCACAACCUCCAUGAACGAGGGUAAUCGACAUGAUCUACGGCUUGAGUUUUUAU

Get precursor sequence

Structure

        10            20        30        40         50       
GGUGAAAUAUGAUAUUU----|    AAU    G    A   UAU-       U   AUGC 
                     CGUGU   AUUA CCUC UUC    GGGUUGU AUG    \
                     GUACA   UAAU GGAG AAG    UCCAACA UAC    A
UAUUUUUGAGUUCGGCAUCUA^    GC-    G    C   UACC       C   UAUA 
     110       100        90         80        70        60