Mir-67

MirGeneDB ID

Gsa-Mir-67

Family name

MIR-67 (all species)

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-67

Paralogues

Orthologues

Aae-Mir-67-v1 Aga-Mir-67-v1 Agr-Mir-67-v1 Asu-Mir-67 Bge-Mir-67 Cbr-Mir-67 Cel-Mir-67 Csc-Mir-67-P12 Csc-Mir-67-P13 Cte-Mir-67 Dan-Mir-67-v1 Dgr-Mir-67 Dlo-Mir-67-P14-v1 Dlo-Mir-67-P15-v1 Dma-Mir-67 Dme-Mir-67-v1 Dmo-Mir-67-v1 Dpu-Mir-67 Dsi-Mir-67-v1 Dya-Mir-67-v1 Eba-Mir-67-v1 Efe-Mir-67-P1 Efe-Mir-67-P2 Efe-Mir-67-P3 Egr-Mir-67 Gpa-Mir-67-P12-v1 Gpa-Mir-67-P13-v1 Hme-Mir-67-v1 Hru-Mir-67 Isc-Mir-67 Lan-Mir-67 Lgi-Mir-67 Lpo-Mir-67-P7 Lpo-Mir-67-P8 Lpo-Mir-67-P9 Lpo-Mir-67-P10 Lpo-Mir-67-P11 Mgi-Mir-67-P4 Mgi-Mir-67-P5 Mgi-Mir-67-P6 Mom-Mir-67-v1 Npo-Mir-67 Obi-Mir-67 Ofu-Mir-67 Ovu-Mir-67 Pau-Mir-67 Pca-Mir-67 Pcr-Mir-67-v1 Pdu-Mir-67 Pve-Mir-67-v1 Rph-Mir-67-v1 Sma-Mir-67 Sme-Mir-67 Snu-Mir-67 Tca-Mir-67-v1 Tur-Mir-67 War-Mir-67-v1

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006949532: 22977-23036 [-] UCSC Ensembl

Seed

CACAACC

Precursor
(pre-Mir +30nt flank)

GUUGAAUGAACUUGAUAAGCUUUCUUAAUUUCUCACAAUGGAGGUUGAGCGCAAUUCUGACCGUUGUCACAACCUCCUUGAUUGAGAUGAUAAAGAAGAGGGAAAACAGCAGAGUUUAUG

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Structure

        10        20        30              40        50         
GUUGAAUGAACUUGAUAAG       AAUU----     --|  U        AGC   AUUCU 
                   CUUUCUU        UCUCA  CAA GGAGGUUG   GCA     \
                   GGGAGAA        AGAGU  GUU CCUCCAAC   UGU     G
GUAUUUGAGACGACAAAA-       GAAAUAGU     UA^  -        AC-   UGCCA 
.       110        100        90        80         70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gsa-Mir-67_5p*

mirBase accession

MIMAT0035262

Sequence

0- UCUCACAAUGGAGGUUGAGCGCA -23

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Mature sequence

Gsa-Mir-67_3p

mirBase accession

MIMAT0035263

Sequence

36- UCACAACCUCCUUGAUUGAGAUGA -60

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