MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-67-P4

Family name MIR-67 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-67-P5  Mgi-Mir-67-P6 
Orthologues Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Cte-Mir-67  Dgr-Mir-67  Dma-Mir-67  Dpu-Mir-67  Egr-Mir-67  Gsa-Mir-67  Hru-Mir-67  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Npo-Mir-67  Obi-Mir-67  Ofu-Mir-67  Ovu-Mir-67  Pau-Mir-67  Pca-Mir-67  Pdu-Mir-67  Sma-Mir-67  Sme-Mir-67  Snu-Mir-67  Tur-Mir-67 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold146: 102295-102351 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-67-P4)		 Mir-67-P4 scaffold146: 102295-102351 [+] Ensembl
Mir-67-P5 scaffold146: 102638-102698 [+] Ensembl
Seed ACAACCU
Precursor
(pre-Mir +30nt flank)		 
CAUUAACUUCUUUCUUUUCUGGUUGUGGAACCUUGUUCAGUUGGGUUGUUGCGUGACAGCUACGUUACAACCUGCUUGAAUGAGGCUUGACGACACAGUACCUUCAGCGGCAGACGA
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Structure
        10         20         30        40        50        
CAUUAACUUCUUUCUUUU-   -|    G  A   UG     UU       U  GUGAC 
                   CUG GUUGU GA CCU  UUCAG  GGGUUGU GC     \
                   GAC CAGCA UU GGA  AAGUU  UCCAACA UG     A
AGCAGACGGCGACUUCCAU   A^    G  C   GU     CG       U  CAUCG 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-67-P4_5p*
mirBase accessionNone
Sequence 
0- CCUUGUUCAGUUGGGUUGUUGC -22
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Mature sequence

Mgi-Mir-67-P4_3p
mirBase accessionNone
Sequence 
35- UACAACCUGCUUGAAUGAGGCU -57
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