MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-190

Family name MIR-190 (all species)
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-190
Paralogues
Orthologues Aae-Mir-190  Aga-Mir-190  Agr-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Egr-Mir-190  Esc-Mir-190  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Isc-Mir-190  Mgi-Mir-190  Mom-Mir-190  Npo-Mir-190  Obi-Mir-190  Ofu-Mir-190  Ovu-Mir-190  Pau-Mir-190  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Pve-Mir-190  Rph-Mir-190  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Tca-Mir-190  Tur-Mir-190  War-Mir-190  Xbo-Mir-190 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Lotgi1)		 LOTGIsca_47: 52951-53013 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-190-v1)		 Mir-92-o31 LOTGIsca_47: 43039-43096 [-] Ensembl
Mir-92-o30 LOTGIsca_47: 43249-43304 [-] Ensembl
Mir-92-o29-v1 LOTGIsca_47: 43373-43430 [-] Ensembl
Mir-92-o29-v2 LOTGIsca_47: 43373-43430 [-] Ensembl
Mir-92-o28 LOTGIsca_47: 46552-46607 [-] Ensembl
Mir-190-v1 LOTGIsca_47: 52951-53013 [-] Ensembl
Mir-190-v2 LOTGIsca_47: 52952-53012 [-] Ensembl
Variant

Lgi-Mir-190-v1
Seed GAUAUGU
Precursor
(pre-Mir +30nt flank)		 
AAAUGUUUGAAGAGUUUGCUGAUCUCUGUUAGAUAUGUUUGAUAUAAUUGGUGGUUAAUGGUUAAAAGUCCACCAAGUAUCAAACAUGUCACUACAGAGGUCUGUCCUUUCACCUACCAAACC
Get precursor sequence
Structure
        10         20        30         40        50        60  
AAAUGUUUGAAGAGUUU-  U         UA-|             AA       UUAAUGG 
                  GC GAUCUCUGU   GAUAUGUUUGAUAU  UUGGUGG       \
                  UG CUGGAGACA   CUGUACAAACUAUG  AACCACC       U
CCAAACCAUCCACUUUCC  U         UCA^             --       UGAAAAU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Lgi-Mir-190-v1_5p
mirBase accessionMIMAT0009586
Sequence 
0- AGAUAUGUUUGAUAUAAUUGGUGG -24
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Star sequence

Lgi-Mir-190-v1_3p* (predicted)
mirBase accessionNone
Sequence 
41- ACCAAGUAUCAAACAUGUCACU -63
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Variant

Lgi-Mir-190-v2
Seed AUAUGUU
Precursor
(pre-Mir +30nt flank)		 
AAUGUUUGAAGAGUUUGCUGAUCUCUGUUAGAUAUGUUUGAUAUAAUUGGUGGUUAAUGGUUAAAAGUCCACCAAGUAUCAAACAUGUCACUACAGAGGUCUGUCCUUUCACCUACCAAAC
Get precursor sequence
Structure
        10         20        30         40        50        60 
AAUGUUUGAAGAGUUUGCU-         UA-|             AA       UUAAUGG 
                    GAUCUCUGU   GAUAUGUUUGAUAU  UUGGUGG       \
                    CUGGAGACA   CUGUACAAACUAUG  AACCACC       U
CAAACCAUCCACUUUCCUGU         UCA^             --       UGAAAAU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Lgi-Mir-190-v2_5p
mirBase accessionMIMAT0009586
Sequence 
0- GAUAUGUUUGAUAUAAUUGGUGG -23
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Star sequence

Lgi-Mir-190-v2_3p* (predicted)
mirBase accessionNone
Sequence 
40- ACCAAGUAUCAAACAUGUCAC -61
Get sequence