MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-92-o29

Family name MIR-92 (all species)
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-92
Paralogues Lgi-Mir-92-o28  Lgi-Mir-92-o29-v1  Lgi-Mir-92-o30  Lgi-Mir-92-o31 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) L. gigantea
Node of Origin (family) Bilateria
Genome context
(Lotgi1)		 LOTGIsca_47: 43373-43430 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o29-v2)		 Mir-92-o31 LOTGIsca_47: 43039-43096 [-] Ensembl
Mir-92-o30 LOTGIsca_47: 43249-43304 [-] Ensembl
Mir-92-o29-v1 LOTGIsca_47: 43373-43430 [-] Ensembl
Mir-92-o29-v2 LOTGIsca_47: 43373-43430 [-] Ensembl
Mir-92-o28 LOTGIsca_47: 46552-46607 [-] Ensembl
Mir-190-v1 LOTGIsca_47: 52951-53013 [-] Ensembl
Mir-190-v2 LOTGIsca_47: 52952-53012 [-] Ensembl
Variant

Lgi-Mir-92-o29-v2
Seed UUGCACU
Precursor
(pre-Mir +30nt flank)		 
UUUAUUUCAUAAUGAAGAAAGAUGAGUUGCAGGUCGUGAUAUUUGCAAUAUGGAGAAGAAUAAUCAAAUUGCACUUGUCCCGGCCUGCUGCAAAGUCUUCACCUCAACUAAAUAGUAU
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Structure
        10         20         30        40        50        
UUUAUUUCAUAAUGAAGA-     GA-| U        U    UU      A  GAGAA 
                   AAGAU   GU GCAGGUCG GAUA  UGCAAU UG     G
                   UUCUG   CG CGUCCGGC CUGU  ACGUUA AC     A
UAUGAUAAAUCAACUCCAC     AAA^ U        C    UC      A  UAAUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Lgi-Mir-92-o29-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUCGUGAUAUUUGCAAUAUG -22
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Mature sequence

Lgi-Mir-92-o29-v2_3p
mirBase accessionMIMAT0009574
Sequence 
37- AUUGCACUUGUCCCGGCCUGC -58
Get sequence
Variant

Lgi-Mir-92-o29-v1
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UUUAUUUCAUAAUGAAGAAAGAUGAGUUGCAGGUCGUGAUAUUUGCAAUAUGGAGAAGAAUAAUCAAAUUGCACUUGUCCCGGCCUGCUGCAAAGUCUUCACCUCAACUAAAUAGUAU
Get precursor sequence
Structure
        10         20         30        40        50        
UUUAUUUCAUAAUGAAGA-     GA-| U        U    UU      A  GAGAA 
                   AAGAU   GU GCAGGUCG GAUA  UGCAAU UG     G
                   UUCUG   CG CGUCCGGC CUGU  ACGUUA AC     A
UAUGAUAAAUCAACUCCAC     AAA^ U        C    UC      A  UAAUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Lgi-Mir-92-o29-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUCGUGAUAUUUGCAAUAUG -22
Get sequence
Mature sequence

Lgi-Mir-92-o29-v1_3p
mirBase accessionMIMAT0009574
Sequence 
36- AAUUGCACUUGUCCCGGCCUGC -58
Get sequence