MirGeneDB 3.0
103 microRNA genes with seed UCACAGU
Sort by genome coordinates Motifs
MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Dsi-Mir-2582-P1 dsi-mir-2582a MIR-2582 UCACAGU MIMAT0012519 MIMAT0012520 X 3954183 3954240 - D. simulans D. simulans Unknown 1
Ebu-Mir-27-P6 None MIR-27 UCACAGU None None FYBX02009928.1 2217985 2218048 - E. burgeri Vertebrata No 1 1
Ebu-Mir-27-P5 None MIR-27 UCACAGU None None FYBX02009499.1 1849044 1849106 - E. burgeri Vertebrata No 1 1
Tni-Mir-27-P4b None MIR-27 UCACAGU None None 15_random 2810064 2810128 + Clupeocephala Vertebrata No
Mal-Mir-27-P4b None MIR-27 UCACAGU None None KV884702.1 2269816 2269878 + Clupeocephala Vertebrata No
Gmo-Mir-27-P4b gmo-mir-27a-1 MIR-27 UCACAGU None MIMAT0044102 GeneScaffold_2105 1930293 1930354 + Clupeocephala Vertebrata No
Tni-Mir-27-P4a tni-mir-27e MIR-27 UCACAGU None MIMAT0003068 1 16059190 16059253 + Clupeocephala Vertebrata No
Mal-Mir-27-P4a None MIR-27 UCACAGU None None KV884817.1 552481 552544 - Clupeocephala Vertebrata No
Gmo-Mir-27-P4a gmo-mir-27a-2 MIR-27 UCACAGU MIMAT0044101 MIMAT0044102 GeneScaffold_1112 350547 350610 - Clupeocephala Vertebrata No
Dre-Mir-27-P4a dre-mir-27e MIR-27 UCACAGU None MIMAT0001800 chr22 5299972 5300035 + Clupeocephala Vertebrata No
Xtr-Mir-27-P4 xtr-mir-27c-1 MIR-27 UCACAGU None MIMAT0003675 chr4 73605412 73605473 + Gnathostomata Vertebrata No
Sto-Mir-27-P4 None MIR-27 AGAACUU None None BFAA01000014.1 1438467 1438532 + Gnathostomata Vertebrata No
Loc-Mir-27-P4 None MIR-27 UCACAGU None None LG19 5780510 5780573 + Gnathostomata Vertebrata No
Lch-Mir-27-P4 None MIR-27 UCACAGU None None JH127091.1 1152893 1152956 - Gnathostomata Vertebrata Unknown 1
Cmi-Mir-27-P4 None MIR-27 UCACAGU None None KI635918.1 1565842 1565904 + Gnathostomata Vertebrata Yes
Xla-Mir-27-P3d None MIR-27 UCACAGU None None NW_016694811.1 2508699 2508760 + X. laevis Vertebrata No 1
Xla-Mir-27-P3c None MIR-27 UCACAGU None None NC_030728.1 133946820 133946881 + X. laevis Vertebrata No 1 1
Sto-Mir-27-P3b None MIR-27 UCACAGU None None BFAA01332160.1 683 746 - S. torazame Vertebrata No
Sto-Mir-27-P3a None MIR-27 GGACUUA None None BFAA01001728.1 154600 154664 - S. torazame Vertebrata No
Xtr-Mir-27-P3 xtr-mir-27a MIR-27 UCACAGU None MIMAT0003570 chr3 129999287 129999348 + Gnathostomata Vertebrata No 1
Tni-Mir-27-P3 tni-mir-27c MIR-27 UCACAGU None MIMAT0003078 3 8970188 8970245 + Gnathostomata Vertebrata No 1 1
Tgu-Mir-27-P3 None MIR-27 UCACAGU None None 30 3316751 3316812 + Gnathostomata Vertebrata Yes 1
Sha-Mir-27-P3 None MIR-27 UCACAGU None None GL841415.1 821157 821219 + Gnathostomata Vertebrata No
Rno-Mir-27-P3 rno-mir-27a MIR-27 UCACAGU MIMAT0004715 MIMAT0000799 chr19 25318749 25318811 + Gnathostomata Vertebrata No 1
Pbv-Mir-27-P3 pbv-mir-27a MIR-27 GGGCUUA MIMAT0038861 MIMAT0038862 KE953590.1 99842 99903 - Gnathostomata Vertebrata Yes 1
Pab-Mir-27-P3 None MIR-27 UCACAGU None None CM054699.2 13876252 13876313 - Gnathostomata Vertebrata No 1
Ocu-Mir-27-P3 None MIR-27 UCACAGU None None VIYN01006261.1 192288 192349 - Gnathostomata Vertebrata No 1
Oan-Mir-27-P3 oan-mir-27a MIR-27 UCACAGU MIMAT0007062 MIMAT0007063 Oan-Mir-24_27-P1_KAAE-cwe25b12 162 221 + Gnathostomata Vertebrata No 1 1
Neu-Mir-27-P3 None MIR-27 UCACAGU None None CM051816.1 77146885 77146947 + Gnathostomata Vertebrata Unknown
Mmu-Mir-27-P3 mmu-mir-27a MIR-27 UCACAGU MIMAT0004633 MIMAT0000537 chr8 84208685 84208747 + Gnathostomata Vertebrata No 1
Mmr-Mir-27-P3 None MIR-27 UCACAGU None None CM007684.1 1345853 1345914 - Gnathostomata Vertebrata No 1
Mml-Mir-27-P3 mml-mir-27a MIR-27 UCACAGU MIMAT0026600 MIMAT0002753 CM014354.1 13435598 13435659 - Gnathostomata Vertebrata No 1
Mdo-Mir-27-P3 mdo-mir-27a MIR-27 UCACAGU MIMAT0026711 MIMAT0004174 3 446526008 446526070 + Gnathostomata Vertebrata No
Mal-Mir-27-P3 None MIR-27 UCACAGU None None KV884862.1 448987 449048 + Gnathostomata Vertebrata No 1 1
Loc-Mir-27-P3 None MIR-27 UCACAGU None None LG6 12902378 12902439 - Gnathostomata Vertebrata No 1
Lch-Mir-27-P3 None MIR-27 UCACAGU None None JH126758.1 377934 377995 - Gnathostomata Vertebrata Unknown
Laf-Mir-27-P3 None MIR-27 UCACAGU None None GL010053.1 29291237 29291298 + Gnathostomata Vertebrata No 1
Hsa-Mir-27-P3 hsa-mir-27a MIR-27 UCACAGU MIMAT0004501 MIMAT0000084 chr19 13836447 13836508 - Gnathostomata Vertebrata No 1
Gmo-Mir-27-P3 gmo-mir-27c MIR-27 UCACAGU MIMAT0044332 MIMAT0044333 scaffold03886 4252 4313 - Gnathostomata Vertebrata No 1 1
Gja-Mir-27-P3 None MIR-27 UCACAGU None None NW_015175453.1 135915 135976 - Gnathostomata Vertebrata Yes 1
Gga-Mir-27-P3 None MIR-27 UCACAGU None None 30 1398469 1398524 + Gnathostomata Vertebrata Yes
Ete-Mir-27-P3 None MIR-27 UCACAGU None None JH980397 3706321 3706382 + Gnathostomata Vertebrata No 1
Eca-Mir-27-P3 eca-mir-27a MIR-27 UCACAGU None MIMAT0012988 CM009154.1 46233215 46233276 + Gnathostomata Vertebrata No 1
Dre-Mir-27-P3 dre-mir-27c MIR-27 UCACAGU MIMAT0003401 MIMAT0001798 chr3 13406464 13406527 + Gnathostomata Vertebrata No 1
Dno-Mir-27-P3 dno-mir-27a MIR-27 UCACAGU MIMAT0047543 MIMAT0047544 AAGV03195862 315 376 + Gnathostomata Vertebrata No 1
Cpo-Mir-27-P3 cpo-mir-27a MIR-27 UCACAGU MIMAT0046890 MIMAT0046891 scaffold_42 12931848 12931908 + Gnathostomata Vertebrata No 1
Cpi-Mir-27-P3 cpi-mir-27a MIR-27 UCACAGU MIMAT0037664 MIMAT0037665 JH584948 868327 868390 - Gnathostomata Vertebrata No
Cmi-Mir-27-P3 None MIR-27 UCACAGU None None KI635928.1 354256 354321 + Gnathostomata Vertebrata No
Cja-Mir-27-P3 None MIR-27 UCACAGU None None CM021936.1 12279802 12279863 - Gnathostomata Vertebrata No 1
Cfa-Mir-27-P3 cfa-mir-27a MIR-27 UCACAGU None MIMAT0006641 chr20 48620555 48620616 + Gnathostomata Vertebrata No 1
Bta-Mir-27-P3 bta-mir-27a MIR-27 UCACAGU MIMAT0012532 MIMAT0003532 NC_037334.1 11838890 11838950 + Gnathostomata Vertebrata No 1
Ami-Mir-27-P3 ami-mir-27a MIR-27 UCACAGU MIMAT0038067 MIMAT0038068 NW_017713323.1 200584 200646 + Gnathostomata Vertebrata No 1
Aca-Mir-27-P3 aca-mir-27a MIR-27 UCACAGU MIMAT0021905 MIMAT0021906 2 29157937 29157998 - Gnathostomata Vertebrata No 1
Xla-Mir-27-P2d None MIR-27 UCACAGU None None NC_030725.1 110864416 110864478 + X. laevis Vertebrata No 1
Xla-Mir-27-P2c xla-mir-27b MIR-27 UCACAGU MIMAT0046560 MIMAT0046561 NC_030724.1 133829110 133829172 + X. laevis Vertebrata No 1
Tni-Mir-27-P2b tni-mir-27b MIR-27 UCACAGU None MIMAT0002952 12 8516519 8516581 + Clupeocephala Vertebrata No 1
Mal-Mir-27-P2b None MIR-27 UCACAGU None None KV884708.1 577864 577926 + Clupeocephala Vertebrata No
Gmo-Mir-27-P2b gmo-mir-27b MIR-27 UCACAGU MIMAT0044008 MIMAT0044009 contig145249 115 177 - Clupeocephala Vertebrata No 1
Dre-Mir-27-P2b dre-mir-27b MIR-27 UCACAGU MIMAT0031950 MIMAT0001797 chr8 30167449 30167508 - Clupeocephala Vertebrata No 1
Mal-Mir-27-P2a None MIR-27 UCACAGU None None KV884846.1 922849 922910 + Clupeocephala Vertebrata No
Dre-Mir-27-P2a dre-mir-27d MIR-27 UCACAGU None MIMAT0001799 chr10 15954740 15954804 + Clupeocephala Vertebrata No
Xtr-Mir-27-P2 xtr-mir-27b MIR-27 UCACAGU None MIMAT0003571 chr1 123463716 123463778 + Gnathostomata Vertebrata No 1
Tgu-Mir-27-P2 tgu-mir-27 MIR-27 UCACAGU MIMAT0026991 MIMAT0014534 Z 10609064 10609126 - Gnathostomata Vertebrata No 1
Sto-Mir-27-P2 None MIR-27 UCACAGU None None BFAA01002700.1 246153 246216 - Gnathostomata Vertebrata No 1
Spt-Mir-27-P2 None MIR-27 UCACAGU None None QEPC01008874.1 6803025 6803087 + Gnathostomata Vertebrata Unknown 1
Sha-Mir-27-P2 sha-mir-27b MIR-27 UCACAGU None MIMAT0022789 GL841474.1 1160088 1160150 + Gnathostomata Vertebrata No
Rno-Mir-27-P2 rno-mir-27b MIR-27 UCACAGU MIMAT0017101 MIMAT0000798 chr17 823479 823541 + Gnathostomata Vertebrata No 1
Pbv-Mir-27-P2 pbv-mir-27b MIR-27 UCACAGU MIMAT0038863 MIMAT0038864 KE954626.1 204891 204953 + Gnathostomata Vertebrata No 1
Pab-Mir-27-P2 None MIR-27 UCACAGU None None CM054692.2 86215676 86215738 + Gnathostomata Vertebrata No 1
Ocu-Mir-27-P2 ocu-mir-27b MIR-27 UCACAGU MIMAT0048139 MIMAT0048140 chr1 74102379 74102441 + Gnathostomata Vertebrata No 1
Oan-Mir-27-P2 oan-mir-27b MIR-27 UCACAGU MIMAT0006956 MIMAT0006957 NC_041753.1 69581278 69581340 + Gnathostomata Vertebrata No
Neu-Mir-27-P2 None MIR-27 UCACAGU None None CM051815.1 329062436 329062498 - Gnathostomata Vertebrata No
Mun-Mir-27-P2 None MIR-27 UCACAGU None None LR594633.1 206442960 206443022 - Gnathostomata Vertebrata No 1
Mmu-Mir-27-P2 mmu-mir-27b MIR-27 UCACAGU MIMAT0004522 MIMAT0000126 chr13 63300718 63300780 + Gnathostomata Vertebrata No 1
Mmr-Mir-27-P2 mmr-mir-27b MIR-27 UCACAGU None MIMAT0049227 CM007670.1 10485875 10485937 + Gnathostomata Vertebrata No 1
Mml-Mir-27-P2 mml-mir-27b MIR-27 UCACAGU MIMAT0026802 MIMAT0006167 CM014350.1 112742253 112742315 - Gnathostomata Vertebrata No 1
Mdo-Mir-27-P2 mdo-mir-27b MIR-27 UCACAGU MIMAT0026714 MIMAT0004177 6 17696108 17696170 + Gnathostomata Vertebrata No
Loc-Mir-27-P2 None MIR-27 UCACAGU None None LG2 32741690 32741752 - Gnathostomata Vertebrata No 1
Lch-Mir-27-P2 None MIR-27 UCACAGU None None JH126823.1 176794 176856 - Gnathostomata Vertebrata Unknown
Laf-Mir-27-P2 None MIR-27 UCACAGU None None GL010033.1 2906077 2906139 - Gnathostomata Vertebrata No 1
Hsa-Mir-27-P2 hsa-mir-27b MIR-27 UCACAGU MIMAT0004588 MIMAT0000419 chr9 95085463 95085525 + Gnathostomata Vertebrata No 1
Gja-Mir-27-P2 None MIR-27 UCACAGU None None NW_015167066.1 327064 327126 + Gnathostomata Vertebrata Yes 1
Gga-Mir-27-P2 gga-mir-27b MIR-27 UCACAGU MIMAT0026547 MIMAT0001187 Z 41660880 41660942 + Gnathostomata Vertebrata No 1
Ete-Mir-27-P2 None MIR-27 UCACAGU None None JH980384 3445414 3445476 - Gnathostomata Vertebrata No 1
Eca-Mir-27-P2 eca-mir-27b MIR-27 UCACAGU None MIMAT0013114 CM009170.1 2132387 2132449 - Gnathostomata Vertebrata No 1
Dno-Mir-27-P2 dno-mir-27b MIR-27 UCACAGU MIMAT0047545 MIMAT0047546 JH570415 2090250 2090312 + Gnathostomata Vertebrata No 1
Cpo-Mir-27-P2 cpo-mir-27b MIR-27 UCACAGU MIMAT0046892 MIMAT0046893 scaffold_42 4055574 4055636 - Gnathostomata Vertebrata No 1
Cpi-Mir-27-P2 cpi-mir-27b MIR-27 UCACAGU MIMAT0037666 MIMAT0037667 JH584764 1108949 1109011 - Gnathostomata Vertebrata No 1
Cmi-Mir-27-P2 None MIR-27 UCACAGU None None KI635929.1 195561 195624 + Gnathostomata Vertebrata No 1
Cli-Mir-27-P2 cli-mir-27b MIR-27 UCACAGU MIMAT0038445 MIMAT0038446 scaffold226 157004 157066 + Gnathostomata Vertebrata No 1
Cja-Mir-27-P2 None MIR-27 UCACAGU None None CM021915.1 77750309 77750371 + Gnathostomata Vertebrata No 1
Cfa-Mir-27-P2 cfa-mir-27b MIR-27 UCACAGU None MIMAT0006613 chr1 71678117 71678179 - Gnathostomata Vertebrata No 1
Bta-Mir-27-P2 bta-mir-27b MIR-27 UCACAGU None MIMAT0003546 NC_037335.1 81617258 81617320 + Gnathostomata Vertebrata No 1
Ami-Mir-27-P2 ami-mir-27b MIR-27 UCACAGU MIMAT0038069 MIMAT0038070 NW_017713772.1 16892748 16892810 - Gnathostomata Vertebrata No
Aca-Mir-27-P2 aca-mir-27b MIR-27 UCACAGU MIMAT0021907 MIMAT0021908 2 40591779 40591841 - Gnathostomata Vertebrata No 1
Tni-Mir-27-P1 None MIR-27 UCACAGU None None 15_random 3094204 3094266 - Gnathostomata Vertebrata No 1
Mal-Mir-27-P1 None MIR-27 UCACAGU None None KV884702.1 3701989 3702051 + Gnathostomata Vertebrata No 1
Loc-Mir-27-P1 None MIR-27 UCACAGU None None LG10 2475632 2475694 - Gnathostomata Vertebrata No
Lch-Mir-27-P1 None MIR-27 UCACAGU None None JH126762.1 1808447 1808510 - Gnathostomata Vertebrata Unknown 1
Gmo-Mir-27-P1 gmo-mir-27d MIR-27 UCACAGU MIMAT0046043 MIMAT0046044 contig135158 456 519 - Gnathostomata Vertebrata No 1
Dre-Mir-27-P1 dre-mir-27a MIR-27 UCACAGU MIMAT0031949 MIMAT0001796 chr2 33902361 33902423 + Gnathostomata Vertebrata No
Pma-Mir-27-o2 pma-mir-27b MIR-27 UCACAGU MIMAT0019414 MIMAT0019415 NC_046069.1 793379 793439 - P. marinus Vertebrata No
Pma-Mir-27-o1 pma-mir-27a MIR-27 UCACAGU None MIMAT0019413 NC_046103.1 7153880 7153942 - P. marinus Vertebrata No 1 1

(red - mature/co-mature, blue - star)

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