MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-27-P5

Family name MIR-27 (all species)
Seed UCACAGU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-27-P6 
Orthologues
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02009499.1: 1849044-1849106 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCACGUGACAUGUUCUUUACCAUGGUGUUGGACUUGGCUCUAUUGUGAGCAGUGGGUUGCCAAAAUGAUGUUCACAGUGGCUAAGUUCCACACCUGGAAAAAUCCUACAGCCAUGGUCCUG
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Structure
        10        20           30        40        50        60  
UAUCACGUGACAUGUUCUUUA---|  U     U          CU          GUGGGUUG 
                        CCA GGUGU GGACUUGGCU  AUUGUGAGCA        \
                        GGU CCACA CUUGAAUCGG  UGACACUUGU        C
GUCCUGGUACCGACAUCCUAAAAA^  -     C          --          AGUAAAAC 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
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Star sequence

Ebu-Mir-27-P5_5p* (predicted)

mirBase accessionNone
Sequence
0- UGGACUUGGCUCUAUUGUGAGCA -23
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Mature sequence

Ebu-Mir-27-P5_3p

mirBase accessionNone
Sequence
42- UUCACAGUGGCUAAGUUCCAC -63
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