| MirGeneDB ID | Ebu-Mir-24-P5 |
|---|
| Family name |
MIR-24 (all species) |
|---|
| Seed |
GGCUCAG |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Eburgeri_3) |
FYBX02009499.1: 1845596-1845653 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACGUCCUGCUUUUUAUGGAUUUGGCUUCUGUGCUACUGAGCUGAUUACAGUCAAUUAUAUACCACUGGCUCAGUUCAGCAGGAACAGAAGAUUGAUCCUCUCCACAAUUAUCCAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACGUCCUGCUUUUUAU-- UGG G-| A UUA CAAUU
GGAUU CUUCUGU CU CUGAGCUGA CAGU A
CCUAG GAAGACA GA GACUUGACU GUCA U
ACUACCUAUUAACACCUCU UUA AG^ C CG- CCAUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ebu-Mir-24-P5_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GUGCUACUGAGCUGAUUACAGU -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-24-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGGCUCAGUUCAGCAGGAACAG -58
Get sequence
|
|---|
