MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-1

Family name MIR-1 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1
Paralogues
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Aca-Mir-1-P2  Aca-Mir-1-P3  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P1  Ami-Mir-1-P2  Ami-Mir-1-P3  Ami-Mir-1-P4  Asu-Mir-1  Ava-Mir-1-P29  Ava-Mir-1-P30  Bfl-Mir-1  Bge-Mir-1  Bko-Mir-1-P22  Bko-Mir-1-P23a  Bko-Mir-1-P23b  Bla-Mir-1  Bpl-Mir-1-P22  Bpl-Mir-1-P23  Bta-Mir-1-P1  Bta-Mir-1-P2  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cfa-Mir-1-P2  Cfa-Mir-1-P3  Cja-Mir-1-P1  Cja-Mir-1-P2  Cja-Mir-1-P3  Cli-Mir-1-P1  Cli-Mir-1-P2  Cli-Mir-1-P3  Cli-Mir-1-P4  Cmi-Mir-1-P1  Cmi-Mir-1-P3  Cmi-Mir-1-P4  Cpi-Mir-1-P1  Cpi-Mir-1-P2  Cpi-Mir-1-P3  Cpi-Mir-1-P4  Cpo-Mir-1-P1  Cpo-Mir-1-P2  Cpo-Mir-1-P3  Csc-Mir-1-P18a  Csc-Mir-1-P18b  Csc-Mir-1-P19  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dno-Mir-1-P2  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P1  Dre-Mir-1-P2a  Dre-Mir-1-P2b  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Ebu-Mir-1-P5  Ebu-Mir-1-P6a  Ebu-Mir-1-P6b  Ebu-Mir-1-P7  Ebu-Mir-1-P8  Eca-Mir-1-P1  Eca-Mir-1-P2  Eca-Mir-1-P3  Efe-Mir-1-P9  Efe-Mir-1-P10  Efe-Mir-1-P11  Efe-Mir-1-P12  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Ete-Mir-1-P2  Ete-Mir-1-P3  Gga-Mir-1-P1  Gga-Mir-1-P2  Gga-Mir-1-P3  Gga-Mir-1-P4  Gja-Mir-1-P1  Gja-Mir-1-P2e  Gja-Mir-1-P2f  Gja-Mir-1-P3  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Gmo-Mir-1-P1  Gmo-Mir-1-P2a  Gmo-Mir-1-P3  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P1  Hsa-Mir-1-P2  Hsa-Mir-1-P3  Isc-Mir-1  Laf-Mir-1-P1  Laf-Mir-1-P2  Laf-Mir-1-P3  Lan-Mir-1  Lch-Mir-1-P1  Lch-Mir-1-P2  Lch-Mir-1-P3  Lch-Mir-1-P4  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P1  Loc-Mir-1-P2  Loc-Mir-1-P3  Lpo-Mir-1-P13  Lpo-Mir-1-P14  Lpo-Mir-1-P15  Lpo-Mir-1-P16  Lpo-Mir-1-P17  Mal-Mir-1-P1  Mal-Mir-1-P2a  Mal-Mir-1-P3  Mdo-Mir-1-P1  Mdo-Mir-1-P2  Mdo-Mir-1-P3  Mgi-Mir-1  Mml-Mir-1-P1  Mml-Mir-1-P2  Mml-Mir-1-P3  Mmr-Mir-1-P1  Mmr-Mir-1-P2  Mmr-Mir-1-P3  Mmu-Mir-1-P1  Mmu-Mir-1-P2  Mmu-Mir-1-P3  Mom-Mir-1  Mun-Mir-1-P1  Mun-Mir-1-P2  Mun-Mir-1-P3  Mun-Mir-1-P4  Neu-Mir-1-P1  Npo-Mir-1-P20  Npo-Mir-1-P21  Oan-Mir-1-P1  Oan-Mir-1-P2  Oan-Mir-1-P3  Oan-Mir-1-P4  Obi-Mir-1  Ocu-Mir-1-P1  Ocu-Mir-1-P2  Ocu-Mir-1-P3  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P1  Pab-Mir-1-P2  Pab-Mir-1-P3  Pau-Mir-1  Pbv-Mir-1-P1  Pbv-Mir-1-P2  Pbv-Mir-1-P3  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o1  Pma-Mir-1-o2  Pma-Mir-1-o3  Pma-Mir-1-o4  Pmi-Mir-1  Pve-Mir-1-P27  Pve-Mir-1-P28  Rno-Mir-1-P1  Rno-Mir-1-P2  Rno-Mir-1-P3  Rph-Mir-1  Sha-Mir-1-P1  Sha-Mir-1-P2  Sha-Mir-1-P3  Sko-Mir-1  Sma-Mir-1  Sme-Mir-1-P24  Sme-Mir-1-P25  Sme-Mir-1-P26  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P1  Spt-Mir-1-P2  Spt-Mir-1-P3  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P1  Sto-Mir-1-P3  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P1  Tgu-Mir-1-P2  Tgu-Mir-1-P3  Tgu-Mir-1-P4  Tni-Mir-1-P1  Tni-Mir-1-P2a  Tni-Mir-1-P3  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xla-Mir-1-P2c  Xla-Mir-1-P2d  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P1  Xtr-Mir-1-P2  Xtr-Mir-1-P3  Xtr-Mir-1-P4 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ci3)		 1: 8400375-8400469 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1)		 Mir-1 1: 8400375-8400469 [+] UCSC Ensembl
Mir-133 1: 8400633-8400695 [+] UCSC Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
UGCUCUGAAAAGUUAUUUCGAGUCUGUCUCACCUACUUCUUUACAUCUUCAUAGACUAAGAAUACCGUGGCUGACAUUUCAAUUGCAGUUCCGGCAACUUAUAUGGAAUGUAAAGAAGUAUGCGUGACAGGCGGCGAAUUUUCAACAAGAGAAAU
Get precursor sequence
Structure
        10         20         30        40        50        60        70       
UGCUCUGAAAAGUUAUU-   A-|      UCACC             C      GACUAAGAAUACCGUGGCUGACA 
                  UCG  GUCUGUC     UACUUCUUUACAU UUCAUA                       U
                  AGC  CGGACAG     AUGAAGAAAUGUA AGGUAU                       U
UAAAGAGAACAACUUUUA   GG^      UGCGU             -      AUUCAACGGCCUUGACGUUAACU 
   150       140       130       120       110        100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-1_5p*
mirBase accessionMIMAT0016392
Sequence 
0- ACCUACUUCUUUACAUCUUCAUA -23
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Mature sequence

Cin-Mir-1_3p
mirBase accessionMIMAT0016393
Sequence 
73- UGGAAUGUAAAGAAGUAUGCGU -95
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