Mir-1-P2d

MirGeneDB ID

Xla-Mir-1-P2d

Family name

MIR-1 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-1-P1a Xla-Mir-1-P1b Xla-Mir-1-P2c Xla-Mir-1-P3a Xla-Mir-1-P3b Xla-Mir-1-P4a Xla-Mir-1-P4b

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xtr-Mir-1-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 130017669-130017728 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2d)

Mir-1-P2d NC_030733.1: 130017669-130017728 [+] UCSC Ensembl
Mir-133-P2d-v1 NC_030733.1: 130020489-130020547 [+] UCSC Ensembl
Mir-133-P2d-v2 NC_030733.1: 130020489-130020547 [+] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

GUAUGAAGGGUGAAUUACUCACGGGAGGUCACAUGCUUCUUUAUAUACCCAUAUGAACUACAUUGCUAUGGAAUGUAAGGAAGUGUGUGGCUUCUCUGAGUCCAUCUCAGCAUUAACCCU

Get precursor sequence

Structure

        10           20        30        40        50          
GUAUGAAGGGUGAAUUA---|   C                        AC     UGAACU 
                    CUCA GGGAGGUCACAUGCUUCUUUAUAU  CCAUA      \
                    GAGU CUCUUCGGUGUGUGAAGGAAUGUA  GGUAU      A
UCCCAAUUACGACUCUACCU^   -                        A-     CGUUAC 
.       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-1-P2d_5p*

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUACCCAUA -23

Get sequence

Mature sequence

Xla-Mir-1-P2d_3p

mirBase accession

None

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

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