Mir-1-P2

MirGeneDB ID

Xtr-Mir-1-P2

Family name

MIR-1 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-206

Paralogues

Xtr-Mir-1-P1 Xtr-Mir-1-P3 Xtr-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chrUn_NW_016683369v1: 1079510-1079569 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-133-P2-v1 chrUn_NW_016683369v1: 1078326-1078384 [-] UCSC Ensembl
Mir-133-P2-v2 chrUn_NW_016683369v1: 1078326-1078384 [-] UCSC Ensembl
Mir-1-P2 chrUn_NW_016683369v1: 1079510-1079569 [-] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

GCGUACGAAGGGCAUUUCUCACGGGAGGUCACAUGCUUCUUUAUAUACCCAUAUGAACUACAUUGUUAUGGAAUGUAAGGAAGUGUGUGGCUUCUCUGAGUCCAUCUCCGGCCGACAUUA

Get precursor sequence

Structure

        10           20        30        40        50          
GCGUACGAAGGGCAUUU---|   C                        AC     UGAACU 
                    CUCA GGGAGGUCACAUGCUUCUUUAUAU  CCAUA      \
                    GAGU CUCUUCGGUGUGUGAAGGAAUGUA  GGUAU      A
AUUACAGCCGGCCUCUACCU^   -                        A-     UGUUAC 
.       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-1-P2_5p*

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUACCCAUA -23

Get sequence

Mature sequence

Xtr-Mir-1-P2_3p

mirBase accession

MIMAT0003623

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

TargetScanVert: xtr-miR-206