| MirGeneDB ID | Lch-Mir-1-P2 |
|---|---|
| Family name | MIR-1 (all species) |
| Seed | GGAAUGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-1-P1 Lch-Mir-1-P3 Lch-Mir-1-P4 |
| Orthologues | Aae-Mir-1 Aca-Mir-1-P2 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Hme-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mml-Mir-1-P2 Mmu-Mir-1-P2 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ovu-Mir-1 Pbv-Mir-1-P2 Pfl-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Sha-Mir-1-P2 Sko-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH130227.1: 100423-100482 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGCAGGCAGGAAUCUUUACUUGCUGAGAUGACAUGCUUCUUUAUAUCCUCAUAUGGGUUUCACAGCUAUGGAAUGUAAGGAAGUGUGUGGUGUCAGUGAGAUCAUCUCAUUACCAACAACGet precursor sequence |
| Structure | 10 20 30 40 50 UGCAGGCAGGAAUCUUUA-- UG G G -| UCAUAUGGGU CU CUGA AU ACAUGCUUCUUUAUA UCC \ GA GACU UG UGUGUGAAGGAAUGU AGG U CAACAACCAUUACUCUACUA GU G G A^ UAUCGACACU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-1-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAUGCUUCUUUAUAUCCUCAUA -23
Get sequence
|
| Mature sequence | Lch-Mir-1-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UGGAAUGUAAGGAAGUGUGUGG -60
Get sequence
|
