| MirGeneDB ID | Lch-Mir-1-P1 |
|---|---|
| Family name | MIR-1 (all species) |
| Seed | GGAAUGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-1-P2 Lch-Mir-1-P3 Lch-Mir-1-P4 |
| Orthologues | Aae-Mir-1 Aca-Mir-1-P1 Ami-Mir-1-P1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P1 Cmi-Mir-1-P1 Cpi-Mir-1-P1 Cpo-Mir-1-P1 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dpu-Mir-1 Dre-Mir-1-P1 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Gga-Mir-1-P1 Gja-Mir-1-P1 Gmo-Mir-1-P1 Hme-Mir-1 Hsa-Mir-1-P1 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Loc-Mir-1-P1 Mal-Mir-1-P1 Mdo-Mir-1-P1 Mml-Mir-1-P1 Mmu-Mir-1-P1 Mun-Mir-1-P1 Oan-Mir-1-P1 Obi-Mir-1 Ocu-Mir-1-P1 Ovu-Mir-1 Pbv-Mir-1-P1 Pfl-Mir-1 Pma-Mir-1-o1 Pmi-Mir-1 Rno-Mir-1-P1 Sha-Mir-1-P1 Sko-Mir-1 Spt-Mir-1-P1 Spu-Mir-1 Sto-Mir-1-P1 Tca-Mir-1 Tgu-Mir-1-P1 Tni-Mir-1-P1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b Xtr-Mir-1-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
BAHO01228262.1: 6305-6365 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAAACACAACCCUUCCACCUGCCCAGAACACAUACUUCUUUAUGUACCCAUAUGAACAUAUGAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGUGGGAAUUGAACAACGGAGAGCCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGAAACACAACCCUUCCA--| UG C C AC UGAACA CC CC AGAA ACAUACUUCUUUAUGU CCAUA U GG GG UUUU UGUAUGAAGAAAUGUA GGUAU A ACCGAGAGGCAACAAGUUAA^ GU U A A- CGUAGU . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Not in assembly but in trace archive. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-1-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAUACUUCUUUAUGUACCCAUA -23
Get sequence
|
| Mature sequence | Lch-Mir-1-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
|
