MirGeneDB

MirGeneDB ID

Spu-Mir-1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-1
Paralogues
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Aca-Mir-1-P2  Aca-Mir-1-P3  Aca-Mir-1-P4  Ami-Mir-1-P1  Ami-Mir-1-P2  Ami-Mir-1-P3  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bta-Mir-1-P1  Bta-Mir-1-P2  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cfa-Mir-1-P2  Cfa-Mir-1-P3  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P1  Cli-Mir-1-P2  Cli-Mir-1-P3  Cli-Mir-1-P4  Cpi-Mir-1-P1  Cpi-Mir-1-P2  Cpi-Mir-1-P3  Cpi-Mir-1-P4  Cpo-Mir-1-P1  Cpo-Mir-1-P2  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dno-Mir-1-P2  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P1  Dre-Mir-1-P2  Dre-Mir-1-P3a  Dre-Mir-1-P3b  Efe-Mir-1-P5  Efe-Mir-1-P6  Efe-Mir-1-P7  Efe-Mir-1-P8  Ete-Mir-1-P1  Ete-Mir-1-P2  Ete-Mir-1-P3  Gga-Mir-1-P1  Gga-Mir-1-P2  Gga-Mir-1-P3  Gga-Mir-1-P4  Hme-Mir-1  Hsa-Mir-1-P1  Hsa-Mir-1-P2  Hsa-Mir-1-P3  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Mdo-Mir-1-P1  Mdo-Mir-1-P2  Mdo-Mir-1-P3  Mml-Mir-1-P1  Mml-Mir-1-P2  Mml-Mir-1-P3  Mmu-Mir-1-P1  Mmu-Mir-1-P2  Mmu-Mir-1-P3  Oan-Mir-1-P1  Oan-Mir-1-P2  Oan-Mir-1-P3  Oan-Mir-1-P4  Ocu-Mir-1-P1  Ocu-Mir-1-P2  Ocu-Mir-1-P3  Pfl-Mir-1  Pmi-Mir-1  Rno-Mir-1-P1  Rno-Mir-1-P2  Rno-Mir-1-P3  Sha-Mir-1-P1  Sha-Mir-1-P2  Sha-Mir-1-P3  Sko-Mir-1  Sto-Mir-1-P1  Sto-Mir-1-P2  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P1  Tgu-Mir-1-P2  Tgu-Mir-1-P3  Xtr-Mir-1-P1  Xtr-Mir-1-P2  Xtr-Mir-1-P3  Xtr-Mir-1-P4 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Spur_3.1)
Scaffold759: 145241-145304 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGACCAUCUUCACCAUAUCCCAUGCCAUAACAUACUUCUUUAGAAUUCCAUACUGAAUCUCCUCAACUCUAUGGAAUGUAAAGAAGUAUGUAUUGAAACUGGGACCUCACAUCACAGAACCAA
Get precursor sequence
Structure
        10         20         30        40        50        60  
UAGACCAUCUUCACCAUA-     UGC-| UA             GA        CUGAAUCU 
                   UCCCA    CA  ACAUACUUCUUUA  AUUCCAUA        \
                   AGGGU    GU  UGUAUGAAGAAAU  UAAGGUAU        C
AACCAAGACACUACACUCC     CAAA^ UA             G-        CUCAACUC 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-1_5p*

MirBase accessionNone
Sequence
0- ACAUACUUCUUUAGAAUUCCAUA -23
Get sequence
Mature sequence

Spu-Mir-1_3p

MirBase accessionMIMAT0009650
Sequence
42- UGGAAUGUAAAGAAGUAUGUAU -64
Get sequence