Mir-1-P4

MirGeneDB ID

Gga-Mir-1-P4

Family name

MIR-1 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-1b

Paralogues

Gga-Mir-1-P1 Gga-Mir-1-P2 Gga-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cpi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gja-Mir-1-P4c Gja-Mir-1-P4d Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o4 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P4 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P4a Xla-Mir-1-P4b Xtr-Mir-1-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

23: 4489739-4489801 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P4)

Mir-1-P4 23: 4489739-4489801 [+] UCSC Ensembl
Mir-133-P4-v1 23: 4489890-4489946 [+] UCSC Ensembl
Mir-133-P4-v2 23: 4489890-4489946 [+] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

CUGUGCCCGCUGCCUCUCCCUCCCAACCCUACAUACUUCUUCAUAUGCCCAUAUGGAGUCGGCCGGCGUUAUGGAAUGUUAAGAAGUAUGUAUCCUCGGGCUGGGACCCCCACGCUGGGACCC

Get precursor sequence

Structure

        10        20             30        40        50        60 
CUGUGCCCGCUGCCUCUCCCU    A   -----|           C    GC     UGGAGUC 
                     CCCA CCC     UACAUACUUCUU AUAU  CCAUA       G
                     GGGU GGG     AUGUAUGAAGAA UGUA  GGUAU       G
CCCAGGGUCGCACCCCCA---    C   CUCCU^           U    A-     UGCGGCC 
 120       110          100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-1-P4_5p*

mirBase accession

MIMAT0026536

Sequence

0- ACAUACUUCUUCAUAUGCCCAUA -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-1b-5p
miRDB: MIMAT0026536

Mature sequence

Gga-Mir-1-P4_3p

mirBase accession

MIMAT0001175

Sequence

41- UGGAAUGUUAAGAAGUAUGUAU -63

Get sequence

Proposed targets

TargetScanVert: gga-miR-1b-3p
miRDB: MIMAT0001175