MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-133-P4

Family name MIR-133 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-133c
Paralogues Gga-Mir-133-P1-v1  Gga-Mir-133-P2-v1  Gga-Mir-133-P3-v1  Gga-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cmi-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 23: 4489890-4489946 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4-v2)		 Mir-1-P4 23: 4489739-4489801 [+] UCSC Ensembl
Mir-133-P4-v1 23: 4489890-4489946 [+] UCSC Ensembl
Mir-133-P4-v2 23: 4489890-4489946 [+] UCSC Ensembl
Variant

Gga-Mir-133-P4-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
CAUGGAACGAAGGAGUGGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGGUGACACGAGAUGACA
Get precursor sequence
Structure
        10          20        30        40         50        
CAUGGAACGAAGGAGUG--|     UC   G       AAA    A-       CAACUA 
                   GUGCCU  CUG GGCUGGU   AAGG  ACCAGAU      \
                   CACGGG  GAC UCGACCA   UUCC  UGGUUUA      C
ACAGUAGAGCACAGUGGAG^     GU   G       AC-    CC       GGUCAA 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-133-P4-v2_5p*
mirBase accessionMIMAT0026537
Sequence 
0- GCUGGUAAAAAGGAACCAGAU -21
Get sequence
Proposed targets TargetScanVert: gga-miR-133c-5p
miRDB: MIMAT0026537
Mature sequence

Gga-Mir-133-P4-v2_3p
mirBase accessionMIMAT0001176
Sequence 
36- UUGGUCCCCUUCAACCAGCUG -57
Get sequence
Proposed targets TargetScanVert: gga-miR-133c-3p
miRDB: MIMAT0001176
Variant

Gga-Mir-133-P4-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
CAUGGAACGAAGGAGUGGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGGUGACACGAGAUGACA
Get precursor sequence
Structure
        10          20        30        40         50        
CAUGGAACGAAGGAGUG--|     UC   G       AAA    A-        AACUA 
                   GUGCCU  CUG GGCUGGU   AAGG  ACCAGAUC     \
                   CACGGG  GAC UCGACCA   UUCC  UGGUUUAG     C
ACAGUAGAGCACAGUGGAG^     GU   G       AC-    CC        GUCAA 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-133-P4-v1_5p*
mirBase accessionMIMAT0026537
Sequence 
0- GCUGGUAAAAAGGAACCAGAUC -22
Get sequence
Proposed targets TargetScanVert: gga-miR-133c-5p
miRDB: MIMAT0026537
Mature sequence

Gga-Mir-133-P4-v1_3p
mirBase accessionMIMAT0001176
Sequence 
35- UUUGGUCCCCUUCAACCAGCUG -57
Get sequence
Proposed targets TargetScanVert: gga-miR-133c-3p
miRDB: MIMAT0001176