MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-133-P4

Family name MIR-133 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-133d
Paralogues Xtr-Mir-133-P1-v1  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P3-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cmi-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr2: 56468434-56468492 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4-v1)		 Mir-133-P4-v1 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-133-P4-v2 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-1-P4 chr2: 56468864-56468924 [-] UCSC Ensembl
Variant

Xtr-Mir-133-P4-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GCCAAAAAAAGGAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGAAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGUCAGGAUUGCAAUAGGUCACUGG
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Structure
        10          20        30         40        50         
GCCAAAAAAAGGAUAGG--   U UG           -|   AA   A   C   AACCCA 
                   CUG C  GUUGCGGCUGG UGAA  GGA CCA AUC      \
                   GAC G  CAACGCCGACC ACUU  CCU GGU UAG      G
GGUCACUGGAUAACGUUAG   U GU           A^   CC   -   U   GAAAAA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-133-P4-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUGAAAAGGAACCACAUC -22
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Mature sequence

Xtr-Mir-133-P4-v1_3p
mirBase accessionMIMAT0003596
Sequence 
37- UUUGGUCCCCUUCAACCAGCCG -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-133d
Variant

Xtr-Mir-133-P4-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
GCCAAAAAAAGGAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGAAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGUCAGGAUUGCAAUAGGUCACUGG
Get precursor sequence
Structure
        10          20        30         40        50         
GCCAAAAAAAGGAUAGG--   U UG           -|   AA   A   C  CAACCCA 
                   CUG C  GUUGCGGCUGG UGAA  GGA CCA AU       \
                   GAC G  CAACGCCGACC ACUU  CCU GGU UA       G
GGUCACUGGAUAACGUUAG   U GU           A^   CC   -   U  GGAAAAA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-133-P4-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUGAAAAGGAACCACAU -21
Get sequence
Mature sequence

Xtr-Mir-133-P4-v2_3p
mirBase accessionMIMAT0003596
Sequence 
38- UUGGUCCCCUUCAACCAGCCG -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-133d