MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-133-P4-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-133d
Paralogues Xtr-Mir-133-P1-v1  Xtr-Mir-133-P1-v2  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P2-v2  Xtr-Mir-133-P3-v1  Xtr-Mir-133-P3-v2  Xtr-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aca-Mir-133-P4-v2  Ami-Mir-133-P4-v1  Ami-Mir-133-P4-v2  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cgi-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cli-Mir-133-P4-v2  Cmi-Mir-133-P4-v1  Cmi-Mir-133-P4-v2  Cpi-Mir-133-P4-v1  Cpi-Mir-133-P4-v2  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gga-Mir-133-P4-v2  Gja-Mir-133-P4-v1  Gja-Mir-133-P4-v2  Hme-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Mun-Mir-133-P4-v1  Mun-Mir-133-P4-v2  Oan-Mir-133-P4-v1  Oan-Mir-133-P4-v2  Obi-Mir-133  Ovu-Mir-133  Pbv-Mir-133-P4-v1  Pbv-Mir-133-P4-v2  Pma-Mir-133-o4-v1  Pma-Mir-133-o4-v2  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Sto-Mir-133-P4-v2  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tgu-Mir-133-P4-v2  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr2: 56468434-56468492 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4-v2)
Mir-133-P4-v1 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-133-P4-v2 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-1-P4 chr2: 56468864-56468924 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAAAAAAAGGAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGAAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGUCAGGAUUGCAAUAGGUCACUGG
Get precursor sequence
Structure
        10          20        30         40        50         
GCCAAAAAAAGGAUAGG--   U UG           -|   AA   A   C  CAACCCA 
                   CUG C  GUUGCGGCUGG UGAA  GGA CCA AU       \
                   GAC G  CAACGCCGACC ACUU  CCU GGU UA       G
GGUCACUGGAUAACGUUAG   U GU           A^   CC   -   U  GGAAAAA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-133-P4-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUGGUGAAAAGGAACCACAU -21
Get sequence
Mature sequence

Xtr-Mir-133-P4-v2_3p

mirBase accessionMIMAT0003596
Sequence
38- UUGGUCCCCUUCAACCAGCCG -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-133d