MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-133-P4a

Family name MIR-133 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-133d
Paralogues Xla-Mir-133-P1a-v1  Xla-Mir-133-P1b-v1  Xla-Mir-133-P2c-v1  Xla-Mir-133-P2d-v1  Xla-Mir-133-P3a-v1  Xla-Mir-133-P3b-v1  Xla-Mir-133-P4b 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cmi-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xtr-Mir-133-P4-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 79594175-79594232 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4a)		 Mir-133-P4a NC_030726.1: 79594175-79594232 [-] UCSC Ensembl
Mir-1-P4a NC_030726.1: 79594590-79594650 [-] UCSC Ensembl
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GGGACAAAAAAGGAUAGUCUGUCUGGUUGCGCUGGUGAAAAGGAACCACAUCAACCCAGCAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGCCAGGAUUGCUUUAGGUAACUG
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Structure
        10        20        30          40        50         
GGGACAAAAAAGGAUAGU   U UG     -     -|   AA   A   C   AACCCA 
                  CUG C  GUUGC GCUGG UGAA  GGA CCA AUC      \
                  GAC G  CAACG CGACC ACUU  CCU GGU UAG      G
GUCAAUGGAUUUCGUUAG   C GU     C     A^   CC   -   U   GAAAAC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-133-P4a_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUGAAAAGGAACCACAUC -22
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Mature sequence

Xla-Mir-133-P4a_3p
mirBase accessionMIMAT0011138
Sequence 
37- UUUGGUCCCCUUCAACCAGCC -58
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