MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-133-P1a

Family name MIR-133 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-133-P1b-v1  Xla-Mir-133-P2c-v1  Xla-Mir-133-P2d-v1  Xla-Mir-133-P3a-v1  Xla-Mir-133-P3b-v1  Xla-Mir-133-P4a  Xla-Mir-133-P4b 
Orthologues Aae-Mir-133  Aca-Mir-133-P1-v1  Aga-Mir-133  Ami-Mir-133-P1-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P1-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P1-v1  Cin-Mir-133  Cja-Mir-133-P1  Cli-Mir-133-P1-v1  Cmi-Mir-133-P1-v1  Cpi-Mir-133-P1-v1  Cpo-Mir-133-P1-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P1-v1  Dpu-Mir-133  Dre-Mir-133-P1-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P1-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P1-v1  Gga-Mir-133-P1-v1  Gja-Mir-133-P1-v1  Gmo-Mir-133-P1-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P1-v1  Isc-Mir-133  Laf-Mir-133-P1-v1  Lan-Mir-133  Lch-Mir-133-P1  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P1-v1  Mal-Mir-133-P1-v1  Mdo-Mir-133-P1-v1  Mgi-Mir-133  Mml-Mir-133-P1-v1  Mmr-Mir-133-P1-v1  Mmu-Mir-133-P1-v1  Mom-Mir-133  Mun-Mir-133-P1-v1  Neu-Mir-133-P1-v1  Oan-Mir-133-P1-v1  Obi-Mir-133  Ocu-Mir-133-P1-v1  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P1  Pau-Mir-133  Pbv-Mir-133-P1-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o1-v1  Pve-Mir-133  Rno-Mir-133-P1-v1  Rph-Mir-133  Sha-Mir-133-P1-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P1  Spu-Mir-133  Sto-Mir-133-P1-v1  Tca-Mir-133  Tgu-Mir-133-P1-v1  Tni-Mir-133-P1-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xtr-Mir-133-P1-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030734.1: 108507055-108507114 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P1a-v1)		 Mir-133-P1a-v1 NC_030734.1: 108507055-108507114 [-] UCSC Ensembl
Mir-133-P1a-v2 NC_030734.1: 108507055-108507114 [-] UCSC Ensembl
Mir-1-P1a NC_030734.1: 108509462-108509522 [-] UCSC Ensembl
Variant

Xla-Mir-133-P1a-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
UAUUCUUAUUGCGCUGCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGGAUUGCAUUGAGGACUACAUAUCCACGG
Get precursor sequence
Structure
        10          20        30        40        50         
UAUUCUUAUUGCGCUGC--|    UUUG   A       AA  U  A        ACCUC 
                   AAUGC    CUA AGCUGGU  AA GG ACCAAAUC     U
                   UUACG    GAU UCGACCA  UU CC UGGUUUAG     U
GGCACCUAUACAUCAGGAG^    UUAG   G       AC  C  C        GUAAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Star sequence

Xla-Mir-133-P1a-v1_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAUC -23
Get sequence
Mature sequence

Xla-Mir-133-P1a-v1_3p
mirBase accessionNone
Sequence 
37- UUUGGUCCCCUUCAACCAGCUGU -60
Get sequence
Variant

Xla-Mir-133-P1a-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
UAUUCUUAUUGCGCUGCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGGAUUGCAUUGAGGACUACAUAUCCACGG
Get precursor sequence
Structure
        10          20        30        40        50         
UAUUCUUAUUGCGCUGC--|    UUUG   A       AA  U  A       CACCUC 
                   AAUGC    CUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG    GAU UCGACCA  UU CC UGGUUUA      U
GGCACCUAUACAUCAGGAG^    UUAG   G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Star sequence

Xla-Mir-133-P1a-v2_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAU -22
Get sequence
Mature sequence

Xla-Mir-133-P1a-v2_3p
mirBase accessionNone
Sequence 
38- UUGGUCCCCUUCAACCAGCUGU -60
Get sequence