MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-133-P4b

Family name MIR-133 (all species)
Seed UUGGUCC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-133d
Paralogues Xla-Mir-133-P1a-v1  Xla-Mir-133-P1a-v2  Xla-Mir-133-P1b-v1  Xla-Mir-133-P1b-v2  Xla-Mir-133-P2c-v1  Xla-Mir-133-P2c-v2  Xla-Mir-133-P2d-v1  Xla-Mir-133-P2d-v2  Xla-Mir-133-P3a-v1  Xla-Mir-133-P3a-v2  Xla-Mir-133-P3b-v1  Xla-Mir-133-P3b-v2  Xla-Mir-133-P4a 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aca-Mir-133-P4-v2  Ami-Mir-133-P4-v1  Ami-Mir-133-P4-v2  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cgi-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cli-Mir-133-P4-v2  Cmi-Mir-133-P4-v1  Cmi-Mir-133-P4-v2  Cpi-Mir-133-P4-v1  Cpi-Mir-133-P4-v2  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gga-Mir-133-P4-v2  Gja-Mir-133-P4-v1  Gja-Mir-133-P4-v2  Hme-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Mun-Mir-133-P4-v1  Mun-Mir-133-P4-v2  Oan-Mir-133-P4-v1  Oan-Mir-133-P4-v2  Obi-Mir-133  Ovu-Mir-133  Pbv-Mir-133-P4-v1  Pbv-Mir-133-P4-v2  Pma-Mir-133-o4-v1  Pma-Mir-133-o4-v2  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Sto-Mir-133-P4-v2  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tgu-Mir-133-P4-v2  Xbo-Mir-133  Xtr-Mir-133-P4-v1  Xtr-Mir-133-P4-v2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 66535254-66535311 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCAAAAAAAAAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGCAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGCCAGGAUUGCAUUAGGUAACUG
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Structure
        10         20        30         40        50         
AGUCAAAAAAAAAUAGG-   U UG           -|   AA   A   C   AACCCA 
                  CUG C  GUUGCGGCUGG UGAA  GGA CCA AUC      \
                  GAC G  CAACGCCGACC ACUU  CCU GGU UAG      G
GUCAAUGGAUUACGUUAG   C GU           A^   CC   -   U   GAAAAC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-133-P4b_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUGGUGAAAAGGAACCACAUC -22
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Mature sequence

Xla-Mir-133-P4b_3p

mirBase accessionMIMAT0011138
Sequence
37- UUUGGUCCCCUUCAACCAGCC -58
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