MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-133-o4

Family name MIR-133 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-133-o1-v1  Pma-Mir-133-o2-v1  Pma-Mir-133-o3-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cmi-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046111.1: 10633037-10633095 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-o4-v1)		 Mir-1-o4 NC_046111.1: 10594887-10594948 [+] UCSC Ensembl
Mir-133-o4-v1 NC_046111.1: 10633037-10633095 [+] UCSC Ensembl
Mir-133-o4-v2 NC_046111.1: 10633037-10633095 [+] UCSC Ensembl
Variant

Pma-Mir-133-o4-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GGAGGAGAUGGAACUGGAAUGCCUUGCUGGCGCUGGUAAAAUGGAACCAAAUCAACAUUUCAACGGCUUUGGUCCCCUUCAACCAGCUCUAGAUAAGCAUUAUGUACUCCGCGUGUACC
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Structure
        10         20         30        40        50          
GGAGGAGAUGGAACUGG-    C    -    C      AA  U  A      -| AACAU 
                  AAUG CUUG CUGG GCUGGU  AA GG ACCAAA UC     \
                  UUAC GAAU GAUC CGACCA  UU CC UGGUUU GG     U
CCAUGUGCGCCUCAUGUA    -    A    U      AC  C  C      C^ CAACU 
       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-133-o4-v1_5p*
mirBase accessionNone
Sequence 
0- CGCUGGUAAAAUGGAACCAAAUC -23
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Mature sequence

Pma-Mir-133-o4-v1_3p
mirBase accessionNone
Sequence 
37- UUUGGUCCCCUUCAACCAGCUC -59
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Variant

Pma-Mir-133-o4-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
GGAGGAGAUGGAACUGGAAUGCCUUGCUGGCGCUGGUAAAAUGGAACCAAAUCAACAUUUCAACGGCUUUGGUCCCCUUCAACCAGCUCUAGAUAAGCAUUAUGUACUCCGCGUGUACC
Get precursor sequence
Structure
        10         20         30        40        50         
GGAGGAGAUGGAACUGG-|    C   -    C      AA  U  A      UCAACAU 
                  AAUGC UUG CUGG GCUGGU  AA GG ACCAAA       U
                  UUACG AAU GAUC CGACCA  UU CC UGGUUU       U
CCAUGUGCGCCUCAUGUA^    -   A    U      AC  C  C      CGGCAAC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-133-o4-v2_5p*
mirBase accessionNone
Sequence 
0- CGCUGGUAAAAUGGAACCAAAU -22
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Mature sequence

Pma-Mir-133-o4-v2_3p
mirBase accessionNone
Sequence 
38- UUGGUCCCCUUCAACCAGCUC -59
Get sequence