Mir-1-o4

MirGeneDB ID

Pma-Mir-1-o4

Family name

MIR-1 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-1c

Paralogues

Pma-Mir-1-o1 Pma-Mir-1-o2 Pma-Mir-1-o3

Orthologues

Aae-Mir-1 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cpi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gga-Mir-1-P4 Gja-Mir-1-P4c Gja-Mir-1-P4d Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P4 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P4a Xla-Mir-1-P4b Xtr-Mir-1-P4

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046111.1: 10594887-10594948 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-o4)

Mir-1-o4 NC_046111.1: 10594887-10594948 [+] UCSC Ensembl
Mir-133-o4-v1 NC_046111.1: 10633037-10633095 [+] UCSC Ensembl
Mir-133-o4-v2 NC_046111.1: 10633037-10633095 [+] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

ACCACCACCACCGCUCACCCUGCCAAGGGCACGUACUUCUUUGUAUUGCCAUACGGAUGUGCUGUAGCUAUGGAAUGUAAAGAAGUAUGUACCCUGGGCAGGGCUCGCAGCGCCACGCCAAG

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Structure

        10          20        30        40        50        60 
ACCACCACCACCGCUCA--|      A    C                 G     CGGAUGU 
                   CCCUGCC AGGG ACGUACUUCUUUGUAUU CCAUA       \
                   GGGACGG UCCC UGUAUGAAGAAAUGUAA GGUAU       G
GAACCGCACCGCGACGCUC^      G    A                 -     CGAUGUC 
120       110       100        90        80         70

Deep sequencing

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Comment

There are two snps between the assembled genome and the miRBase entry.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-1-o4_5p*

mirBase accession

MIMAT0019367

Sequence

0- ACGUACUUCUUUGUAUUGCCAUA -23

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Mature sequence

Pma-Mir-1-o4_3p

mirBase accession

MIMAT0019368

Sequence

40- UGGAAUGUAAAGAAGUAUGUAC -62

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