MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-1-o3

Family name MIR-1 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-1-o1  Pma-Mir-1-o2  Pma-Mir-1-o4 
Orthologues Aae-Mir-1  Aca-Mir-1-P3  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P3  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P3  Cin-Mir-1  Cja-Mir-1-P3  Cli-Mir-1-P3  Cmi-Mir-1-P3  Cpi-Mir-1-P3  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P3  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P3  Gga-Mir-1-P3  Gja-Mir-1-P3  Gmo-Mir-1-P3  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P3  Isc-Mir-1  Laf-Mir-1-P3  Lan-Mir-1  Lch-Mir-1-P3  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P3  Mal-Mir-1-P3  Mdo-Mir-1-P3  Mgi-Mir-1  Mml-Mir-1-P3  Mmr-Mir-1-P3  Mmu-Mir-1-P3  Mom-Mir-1  Mun-Mir-1-P3  Oan-Mir-1-P3  Obi-Mir-1  Ocu-Mir-1-P3  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P3  Pau-Mir-1  Pbv-Mir-1-P3  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rno-Mir-1-P3  Rph-Mir-1  Sha-Mir-1-P3  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P3  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P3  Tca-Mir-1  Tgu-Mir-1-P3  Tni-Mir-1-P3  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xtr-Mir-1-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046091.1: 2243020-2243080 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-o3)		 Mir-1-o3 NC_046091.1: 2243020-2243080 [+] UCSC Ensembl
Mir-133-o3-v1 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Mir-133-o3-v2 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
UGGCGCGCAACUCUUGGCCCAGUCAAGUUCACGUACUUCUUUAUAUGCCCAUAUGAGAGCUCGCUGCUAUGGAAUGUAAAGAAGUAUGUAUGUUUGGCUCCGGGGCAGAAUCGUCGCUCGC
Get precursor sequence
Structure
        10        20          30        40        50        60
UGGCGCGCAACUCUUGGC  --|       UC                GC     UGAGAG 
                  CC  AGUCAAGU  ACGUACUUCUUUAUAU  CCAUA      C
                  GG  UCGGUUUG  UGUAUGAAGAAAUGUA  GGUAU      U
CGCUCGCUGCUAAGACGG  CC^       UA                A-     CGUCGC 
 .       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-1-o3_5p*
mirBase accessionNone
Sequence 
0- ACGUACUUCUUUAUAUGCCCAUA -23
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Mature sequence

Pma-Mir-1-o3_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGUAU -61
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