Mir-1-o3

MirGeneDB ID

Pma-Mir-1-o3

Family name

MIR-1 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-1-o1 Pma-Mir-1-o2 Pma-Mir-1-o4

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P3 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P3 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P3 Mmr-Mir-1-P3 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P3 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pmi-Mir-1 Rno-Mir-1-P3 Rph-Mir-1 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046091.1: 2243020-2243080 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-o3)

Mir-1-o3 NC_046091.1: 2243020-2243080 [+] UCSC Ensembl
Mir-133-o3-v1 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Mir-133-o3-v2 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

UGGCGCGCAACUCUUGGCCCAGUCAAGUUCACGUACUUCUUUAUAUGCCCAUAUGAGAGCUCGCUGCUAUGGAAUGUAAAGAAGUAUGUAUGUUUGGCUCCGGGGCAGAAUCGUCGCUCGC

Get precursor sequence

Structure

        10        20          30        40        50        60
UGGCGCGCAACUCUUGGC  --|       UC                GC     UGAGAG 
                  CC  AGUCAAGU  ACGUACUUCUUUAUAU  CCAUA      C
                  GG  UCGGUUUG  UGUAUGAAGAAAUGUA  GGUAU      U
CGCUCGCUGCUAAGACGG  CC^       UA                A-     CGUCGC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-1-o3_5p*

mirBase accession

None

Sequence

0- ACGUACUUCUUUAUAUGCCCAUA -23

Get sequence

Mature sequence

Pma-Mir-1-o3_3p

mirBase accession

None

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

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