MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1-P3

Family name MIR-1 (all species)
Seed GGAAUGU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1-1
Paralogues Tgu-Mir-1-P1  Tgu-Mir-1-P2  Tgu-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P3  Ami-Mir-1-P3  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P3  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P3  Cmi-Mir-1-P3  Cpi-Mir-1-P3  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P3  Gga-Mir-1-P3  Gja-Mir-1-P3  Gmo-Mir-1-P3  Hme-Mir-1  Hsa-Mir-1-P3  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P3  Lgi-Mir-1  Loc-Mir-1-P3  Mal-Mir-1-P3  Mdo-Mir-1-P3  Mml-Mir-1-P3  Mmu-Mir-1-P3  Mun-Mir-1-P3  Oan-Mir-1-P3  Obi-Mir-1  Ocu-Mir-1-P3  Ovu-Mir-1  Pbv-Mir-1-P3  Pfl-Mir-1  Pma-Mir-1-o3  Pmi-Mir-1  Rno-Mir-1-P3  Sha-Mir-1-P3  Sko-Mir-1  Spt-Mir-1-P3  Spu-Mir-1  Sto-Mir-1-P3  Tca-Mir-1  Tni-Mir-1-P3  Xbo-Mir-1  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xtr-Mir-1-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
20: 9774777-9774837 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P3)
Mir-133-P3-v1 20: 9762467-9762526 [-] UCSC Ensembl
Mir-133-P3-v2 20: 9762467-9762526 [-] UCSC Ensembl
Mir-1-P3 20: 9774777-9774837 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCGCAUAUUGAAACUACCUGCUUGAGAGACAUACUUCUUUAUAUGCCCAUAUGAACCUGGCAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUGGGAAUCCUUCUCAGAGGAGCAA
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Structure
        10          20        30        40        50        60
AUGCGCAUAUUGAAACUA--| UG       G                GC     UGAACC 
                    CC  CUUGAGA ACAUACUUCUUUAUAU  CCAUA      U
                    GG  GGACUUU UGUAUGAAGAAAUGUA  GGUAU      G
AACGAGGAGACUCUUCCUAA^ GU       A                A-     CGAACG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1-P3_5p*

mirBase accessionMIMAT0031087
Sequence
0- ACAUACUUCUUUAUAUGCCCAUA -23
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Mature sequence

Tgu-Mir-1-P3_3p

mirBase accessionMIMAT0014562
Sequence
39- UGGAAUGUAAAGAAGUAUGUAU -61
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