Mir-1-P3

MirGeneDB ID

Bta-Mir-1-P3

Family name

MIR-1 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-1-1

Paralogues

Bta-Mir-1-P1 Bta-Mir-1-P2

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P3 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P3 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P3 Mmr-Mir-1-P3 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P3 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Rph-Mir-1 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037340.1: 54745914-54745974 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3)

Mir-133-P3-v1 NC_037340.1: 54735670-54735729 [-] UCSC Ensembl
Mir-133-P3-v2 NC_037340.1: 54735670-54735729 [-] UCSC Ensembl
Mir-1-P3 NC_037340.1: 54745914-54745974 [-] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

GCCAUGCCCGCUGGACUACCUGCUUGGGAAACAUACUUCUUUAUGUGCCCAUAUGGACCUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUCGGGAACUCUCUCGCUGGAGGAA

Get precursor sequence

Structure

        10         20         30        40        50        60
GCCAUGCCCGCUGGACUA-    -|   GG A                GC     UGGACC 
                   CCUG CUUG  A ACAUACUUCUUUAUGU  CCAUA      U
                   GGGC GGAC  U UGUAUGAAGAAAUGUA  GGUAU      G
AAGGAGGUCGCUCUCUCAA    U^   UU A                A-     CGAAUC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-1-P3_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUGUGCCCAUA -23

Get sequence

Mature sequence

Bta-Mir-1-P3_3p

mirBase accession

MIMAT0009214

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

TargetScanVert: bta-miR-1