Mir-1-P3b

MirGeneDB ID

Xla-Mir-1-P3b

Family name

MIR-1 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-1-P1a Xla-Mir-1-P1b Xla-Mir-1-P2c Xla-Mir-1-P2d Xla-Mir-1-P3a Xla-Mir-1-P4a Xla-Mir-1-P4b

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P3 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P3 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P3 Mmr-Mir-1-P3 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P3 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Rph-Mir-1 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xtr-Mir-1-P3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030741.1: 13060817-13060878 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3b)

Mir-133-P3b-v1 NC_030741.1: 13042355-13042413 [-] UCSC Ensembl
Mir-133-P3b-v2 NC_030741.1: 13042355-13042413 [-] UCSC Ensembl
Mir-1-P3b NC_030741.1: 13060817-13060878 [-] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

ACCCUUAGGAGCUCGCACCCUAUUUGGGAGACAUACUUCUUUAUAUAUCCAUAUGAAAGUGCCAGUGCUAUGGAAUGUAAAGAAGUAUGUAUCUCCGGUAGGGGUCUGCCACAAAGACACUA

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACCCUUAGGAGCUCGCA--|     UU    G                A      UGAAAGU 
                   CCCUAU  GGGA ACAUACUUCUUUAUAU UCCAUA       \
                   GGGAUG  CUCU UGUAUGAAGAAAUGUA AGGUAU       G
AUCACAGAAACACCGUCUG^     GC    A                -      CGUGACC 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-1-P3b_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUAUAUCCAUA -23

Get sequence

Mature sequence

Xla-Mir-1-P3b_3p

mirBase accession

None

Sequence

40- UGGAAUGUAAAGAAGUAUGUAU -62

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