MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-1-P4a

Family name MIR-1 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-1b
Paralogues Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xla-Mir-1-P2c  Xla-Mir-1-P2d  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xla-Mir-1-P4b 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xtr-Mir-1-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 79594590-79594650 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P4a)		 Mir-133-P4a NC_030726.1: 79594175-79594232 [-] UCSC Ensembl
Mir-1-P4a NC_030726.1: 79594590-79594650 [-] UCSC Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
UUCAAUGCCUUUGAUAUCGGUCUUUAGGGCACAUACUUCUUUAUAUGCCCAUACUGAAUGCCAAUGCUAUGGAAUGUUAAGAAGUAUGUAACCUAAGGUUGCCUUUUCAGCUGGGACGCAG
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Structure
        10        20          30        40        50        60
UUCAAUGCCUUUGAUAUC   --|      GC           U    GC     CUGAAU 
                  GGU  CUUUAGG  ACAUACUUCUU AUAU  CCAUA      G
                  CCG  GGAAUCC  UGUAUGAAGAA UGUA  GGUAU      C
GACGCAGGGUCGACUUUU   UU^      AA           U    A-     CGUAAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-1-P4a_5p*
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUAUGCCCAUA -23
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Mature sequence

Xla-Mir-1-P4a_3p
mirBase accessionMIMAT0011135
Sequence 
39- UGGAAUGUUAAGAAGUAUGUAA -61
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