Mir-1-P4

MirGeneDB ID

Cpi-Mir-1-P4

Family name

MIR-1 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-1b

Paralogues

Cpi-Mir-1-P1 Cpi-Mir-1-P2 Cpi-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gga-Mir-1-P4 Gja-Mir-1-P4c Gja-Mir-1-P4d Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o4 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P4 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P4a Xla-Mir-1-P4b Xtr-Mir-1-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584691: 3527598-3527660 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P4)

Mir-1-P4 JH584691: 3527598-3527660 [+] UCSC Ensembl
Mir-133-P4-v1 JH584691: 3527810-3527867 [+] UCSC Ensembl
Mir-133-P4-v2 JH584691: 3527810-3527867 [+] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

CUGGAGGAGCAGCCCCUCCCUCCCAACCCUACAUACUUCUUCAUAUGCCCAUAGGGAGUCAGCCGGCGUUAUGGAAUGUUAAGAAGUAUGUAUCCUUGGGCUGGGGUCCUCACGUCCUGCAGG

Get precursor sequence

Structure

        10         20         30        40        50        60 
CUGGAGGAGCAGCCCCU-   U-|    CCC            C    GC     GGGAGUC 
                  CCC  CCCAA   UACAUACUUCUU AUAU  CCAUA       A
                  GGG  GGGUU   AUGUAUGAAGAA UGUA  GGUAU       G
GGACGUCCUGCACUCCUG   UC^    CCU            U    A-     UGCGGCC 
 120       110       100        90        80         70