MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-1-P4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-1-P1  Sto-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ovu-Mir-1  Pbv-Mir-1-P4  Pfl-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Sko-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Tca-Mir-1  Tgu-Mir-1-P4  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)		 BFAA01009687.1: 86600-86658 [-]
Precursor
(pre-Mir +30nt flank)
AAACCUUGGUGUCCGACCCUGCCCAGAGUUACGUACUUCUUCAUAUGCCCAUAUGAGUUUCCAGGCUAUGGAAUGUAAAGAAGUAUGUAUUUGUGGUGUGGAACAUCUUCAAUCAUAAA
Get precursor sequence
Structure
        10        20         30        40        50          
AAACCUUGGUGUCCGACC UG -|  G  U            C    GC     UGAGUU 
                  C  C CCA AG UACGUACUUCUU AUAU  CCAUA      \
                  G  G GGU UU AUGUAUGAAGAA UGUA  GGUAU      U
AAAUACUAACUUCUACAA GU U^  G  U            A    A-     CGGACC 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThis gene is classified as a Group 2 miRNA because although the 3'-most U would be templated given the 5' end of the 3' offset reads it appears that the terminal U is added post-transcriptionally.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-1-P4_5p*
mirBase accessionNone
Sequence 
0- ACGUACUUCUUCAUAUGCCCAUA -23
Get sequence
Mature sequence

Sto-Mir-1-P4_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAAGAAGUAUGUA -59
Get sequence