| MirGeneDB ID | Spt-Mir-1-P4 |
|---|---|
| Family name | MIR-1 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-1-P1 Spt-Mir-1-P2 Spt-Mir-1-P3 |
| Orthologues | Aae-Mir-1 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cpi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gga-Mir-1-P4 Gja-Mir-1-P4c Gja-Mir-1-P4d Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o4 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P4a Xla-Mir-1-P4b Xtr-Mir-1-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003729.1: 1183905-1183967 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-1-P4) |
Mir-1-P4
QEPC01003729.1: 1183905-1183967 [+]
UCSC
Ensembl
Mir-133-P4 QEPC01003729.1: 1184043-1184100 [+] UCSC Ensembl |
| Seed | GGAAUGU |
| Precursor (pre-Mir +30nt flank) |
GGAGUUGCUAUCCCUAUCCCUCCCGAGCCUACAUACUUCUUCAUAUGCCCAUAUGGAGUCGGCUGGCGUUAUGGAAUGUUAAGAAGUAUGUAUCAUUGGGCUGGGAUUCCUGCUGGCUGCAAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGAGUUGCUAUCCCUAU- U-| GCC C GC UGGAGUC CCC CCCGA UACAUACUUCUU AUAU CCAUA G GGG GGGUU AUGUAUGAAGAA UGUA GGUAU G GAACGUCGGUCGUCCUUA UC^ ACU U A- UGCGGUC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-1-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAUACUUCUUCAUAUGCCCAUA -23
Get sequence
|
| Mature sequence | Spt-Mir-1-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- UGGAAUGUUAAGAAGUAUGUAU -63
Get sequence
|
