MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-1-P4

Family name MIR-1 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-1-P1  Cmi-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635975.1: 547780-547839 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P4)		 Mir-1-P4 KI635975.1: 547780-547839 [+] UCSC Ensembl
Mir-133-P4-v1 KI635975.1: 553219-553278 [+] UCSC Ensembl
Mir-133-P4-v2 KI635975.1: 553219-553278 [+] UCSC Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
GCUGCGUGAAAAACUACACUAUCCAAAACUGCAUACUUCUUCAUAUGCCCAUAUGAAAUGCUUUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGGGUGAAACAUCUGCAGCAAUGAGA
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Structure
        10        20          30        40        50          
GCUGCGUGAAAAACUACACUA--|      C            C    GC     UGAAAU 
                       UCCAAAA UGCAUACUUCUU AUAU  CCAUA      \
                       GGGUUUU AUGUAUGAAGAA UGUA  GGUAU      G
AGAGUAACGACGUCUACAAAGUG^      U            A    A-     CGUUUC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-1-P4_5p*
mirBase accessionNone
Sequence 
0- GCAUACUUCUUCAUAUGCCCAUA -23
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Mature sequence

Cmi-Mir-1-P4_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAAGAAGUAUGUAU -60
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