MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-133-P4

Family name MIR-133 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-133-P1-v1  Cmi-Mir-133-P3-v1  Cmi-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635975.1: 553219-553278 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4-v2)		 Mir-1-P4 KI635975.1: 547780-547839 [+] UCSC Ensembl
Mir-133-P4-v1 KI635975.1: 553219-553278 [+] UCSC Ensembl
Mir-133-P4-v2 KI635975.1: 553219-553278 [+] UCSC Ensembl
Variant

Cmi-Mir-133-P4-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
AAUGUGAGCGAGCAGCAGAUGUUUUGCUGAAGCUGGUAAAAGAGAACCAGAUCGAUUGUUACACGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUCAUCACACCAUCGAAGCCC
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Structure
        10          20        30        40        50         
AAUGUGAGCGAGCAGCA--|    UUU    A       AA   AGA       CGAUUG 
                   GAUGU   GCUG AGCUGGU  AAG   ACCAGAU      U
                   UUACG   CGAU UCGACCA  UUC   UGGUUUA      U
CCCGAAGCUACCACACUAC^    UGU    G       AC   CCC       GGCACA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-133-P4-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAGAGAACCAGAU -22
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Mature sequence

Cmi-Mir-133-P4-v2_3p
mirBase accessionNone
Sequence 
38- UUGGUCCCCUUCAACCAGCUGU -60
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Variant

Cmi-Mir-133-P4-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
AAUGUGAGCGAGCAGCAGAUGUUUUGCUGAAGCUGGUAAAAGAGAACCAGAUCGAUUGUUACACGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUCAUCACACCAUCGAAGCCC
Get precursor sequence
Structure
        10          20        30        40        50         
AAUGUGAGCGAGCAGCA--|    UUU    A       AA   AGA        GAUUG 
                   GAUGU   GCUG AGCUGGU  AAG   ACCAGAUC     U
                   UUACG   CGAU UCGACCA  UUC   UGGUUUAG     U
CCCGAAGCUACCACACUAC^    UGU    G       AC   CCC        GCACA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-133-P4-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAGAGAACCAGAUC -23
Get sequence
Mature sequence

Cmi-Mir-133-P4-v1_3p
mirBase accessionNone
Sequence 
37- UUUGGUCCCCUUCAACCAGCUGU -60
Get sequence