MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-133-P4

Family name MIR-133 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-133-P1  Lch-Mir-133-P2  Lch-Mir-133-P3 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aga-Mir-133  Ami-Mir-133-P4-v1  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cmi-Mir-133-P4-v1  Cpi-Mir-133-P4-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gja-Mir-133-P4-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Oan-Mir-133-P4-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126588.1: 1226968-1227025 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4)		 Mir-133-P4 JH126588.1: 1226968-1227025 [-] Ensembl
Mir-1-P4 JH126588.1: 1227790-1227852 [-] Ensembl
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GGUGAUGGGAAAAGGGAAUGCUUUGCUGAAGCUGGUAAAAUGGAACCAGAUCAACUUUCUAUUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUUAUCUCAACAGACUAUAC
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Structure
        10          20        30        40        50        
GGUGAUGGGAAAAGGGA--|   UUU    A       AA  U  A        AACUU 
                   AUGC   GCUG AGCUGGU  AA GG ACCAGAUC     U
                   UACG   CGAU UCGACCA  UU CC UGGUUUAG     C
CAUAUCAGACAACUCUAUU^   UGU    G       AC  C  C        GUUAU 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-133-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUGGUAAAAUGGAACCAGAUC -22
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Mature sequence

Lch-Mir-133-P4_3p (predicted)
mirBase accessionNone
Sequence 
36- UUUGGUCCCCUUCAACCAGCUG -58
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