| MirGeneDB ID | Spt-Mir-133-P4 |
|---|---|
| Family name | MIR-133 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-133-P1 Spt-Mir-133-P2 Spt-Mir-133-P3 |
| Orthologues | Aae-Mir-133 Aca-Mir-133-P4-v1 Aga-Mir-133 Ami-Mir-133-P4-v1 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cmi-Mir-133-P4-v1 Cpi-Mir-133-P4-v1 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gga-Mir-133-P4-v1 Gja-Mir-133-P4-v1 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Mun-Mir-133-P4-v1 Oan-Mir-133-P4-v1 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P4-v1 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o4-v1 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spu-Mir-133 Sto-Mir-133-P4-v1 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P4a Xla-Mir-133-P4b Xtr-Mir-133-P4-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003729.1: 1184043-1184100 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-133-P4) |
Mir-1-P4
QEPC01003729.1: 1183905-1183967 [+]
UCSC
Ensembl
Mir-133-P4 QEPC01003729.1: 1184043-1184100 [+] UCSC Ensembl |
| Seed | UUGGUCC |
| Precursor (pre-Mir +30nt flank) |
CAAGGGGCUGGAAGCAAAUGCUCUCCUGGGGCUGGUAAAAAGGAACCAAAUCGACUUGGAACUGGAUUUGGUCCCCUUCAACCAGCUGUGGCGGCGCAUCUGGCAUCAUCGGCACCACGet precursor sequence |
| Structure | 10 20 30 40 50 CAAGGGGCUGGAAGCAA--| U C G AAA A- GACUU AUGC CU CUG GGCUGGU AAGG ACCAAAUC G UACG GG GGU UCGACCA UUCC UGGUUUAG G CACCACGGCUACUACGGUC^ C C G AC- CC GUCAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-133-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUGGUAAAAAGGAACCAAAUC -22
Get sequence
|
| Mature sequence | Spt-Mir-133-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UUUGGUCCCCUUCAACCAGCUG -58
Get sequence
|
