MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-1-P1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-1-P3  Cmi-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Ami-Mir-1-P1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P1  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P1  Cpi-Mir-1-P1  Cpo-Mir-1-P1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dpu-Mir-1  Dre-Mir-1-P1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Gga-Mir-1-P1  Gja-Mir-1-P1  Gmo-Mir-1-P1  Hme-Mir-1  Hsa-Mir-1-P1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P1  Lgi-Mir-1  Loc-Mir-1-P1  Mal-Mir-1-P1  Mdo-Mir-1-P1  Mml-Mir-1-P1  Mmu-Mir-1-P1  Mun-Mir-1-P1  Oan-Mir-1-P1  Obi-Mir-1  Ocu-Mir-1-P1  Ovu-Mir-1  Pbv-Mir-1-P1  Pfl-Mir-1  Pma-Mir-1-o1  Pmi-Mir-1  Rno-Mir-1-P1  Sha-Mir-1-P1  Sko-Mir-1  Spt-Mir-1-P1  Spu-Mir-1  Sto-Mir-1-P1  Tca-Mir-1  Tgu-Mir-1-P1  Tni-Mir-1-P1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xtr-Mir-1-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635943.1: 1405336-1405395 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACCUGCAACUUUCUUUCCUGCCUGGAACACAUACUUCUUUAUAUACCCAUAUGAACUUAACAGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGUGGGUAUUGAACAACUAAGAAGAG
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Structure
        10          20        30        40        50          
GGACCUGCAACUUUCUUU--| UG  UG   C                AC     UGAACU 
                    CC  CC  GAA ACAUACUUCUUUAUAU  CCAUA      \
                    GG  GG  UUU UGUAUGAAGAAAUGUA  GGUAU      U
GAGAAGAAUCAACAAGUUAU^ GU  UU   A                A-     CGACAA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-1-P1_5p*
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUAUACCCAUA -23
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Mature sequence

Cmi-Mir-1-P1_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAAGAAGUAUGUAU -60
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